bump to 3.0.7

(transplanted from 392ffce3b9
)

CMakeLists.txt

@@ -279,9 +279,21 @@ install(FILES
   )
 
 if(EIGEN_BUILD_PKGCONFIG)
+    SET(path_separator ":")
+    STRING(REPLACE ${path_separator} ";" pkg_config_libdir_search "$ENV{PKG_CONFIG_LIBDIR}")
+    message(STATUS "searching for 'pkgconfig' directory in PKG_CONFIG_LIBDIR ( $ENV{PKG_CONFIG_LIBDIR} ), ${CMAKE_INSTALL_PREFIX}/share, and ${CMAKE_INSTALL_PREFIX}/lib")
+    FIND_PATH(pkg_config_libdir pkgconfig ${pkg_config_libdir_search} ${CMAKE_INSTALL_PREFIX}/share ${CMAKE_INSTALL_PREFIX}/lib ${pkg_config_libdir_search})
+    if(pkg_config_libdir)
+        SET(pkg_config_install_dir ${pkg_config_libdir})
+        message(STATUS "found ${pkg_config_libdir}/pkgconfig" )
+    else(pkg_config_libdir)
+        SET(pkg_config_install_dir ${CMAKE_INSTALL_PREFIX}/share)
+        message(STATUS "pkgconfig not found; installing in ${pkg_config_install_dir}" )
+    endif(pkg_config_libdir)
+
     configure_file(eigen3.pc.in eigen3.pc)
     install(FILES ${CMAKE_CURRENT_BINARY_DIR}/eigen3.pc
-        DESTINATION share/pkgconfig
+        DESTINATION ${pkg_config_install_dir}/pkgconfig
         )
 endif(EIGEN_BUILD_PKGCONFIG)
 
@@ -321,9 +333,9 @@ endif()
 configure_file(${CMAKE_BINARY_DIR}/DartConfiguration.tcl ${CMAKE_BINARY_DIR}/DartConfiguration.tcl)
 # restore default CMAKE_MAKE_PROGRAM
 set(CMAKE_MAKE_PROGRAM ${CMAKE_MAKE_PROGRAM_SAVE})
-# un-set temporary variables so that it is like they never existed. 
+# un-set temporary variables so that it is like they never existed.
 # CMake 2.6.3 introduces the more logical unset() syntax for this.
-set(CMAKE_MAKE_PROGRAM_SAVE) 
+set(CMAKE_MAKE_PROGRAM_SAVE)
 set(EIGEN_MAKECOMMAND_PLACEHOLDER)
 
 configure_file(${CMAKE_SOURCE_DIR}/CTestCustom.cmake.in ${CMAKE_BINARY_DIR}/CTestCustom.cmake)

CTestConfig.cmake

@@ -8,6 +8,6 @@ set(CTEST_PROJECT_NAME "Eigen")
 set(CTEST_NIGHTLY_START_TIME "00:00:00 UTC")
 
 set(CTEST_DROP_METHOD "http")
-set(CTEST_DROP_SITE "eigen.tuxfamily.org")
+set(CTEST_DROP_SITE "manao.inria.fr")
 set(CTEST_DROP_LOCATION "/CDash/submit.php?project=Eigen")
 set(CTEST_DROP_SITE_CDASH TRUE)

Eigen/Core

@@ -136,7 +136,7 @@
 #endif
 
 // MSVC for windows mobile does not have the errno.h file
-#if !(defined(_MSC_VER) && defined(_WIN32_WCE))
+#if !(defined(_MSC_VER) && defined(_WIN32_WCE)) && !defined(__ARMCC_VERSION)
 #define EIGEN_HAS_ERRNO
 #endif
 
@@ -167,7 +167,7 @@
   #include <intrin.h>
 #endif
 
-#if (defined(_CPPUNWIND) || defined(__EXCEPTIONS)) && !defined(EIGEN_NO_EXCEPTIONS)
+#if defined(_CPPUNWIND) || defined(__EXCEPTIONS)
   #define EIGEN_EXCEPTIONS
 #endif
 
@@ -175,13 +175,6 @@
   #include <new>
 #endif
 
-// this needs to be done after all possible windows C header includes and before any Eigen source includes
-// (system C++ includes are supposed to be able to deal with this already):
-// windows.h defines min and max macros which would make Eigen fail to compile.
-#if defined(min) || defined(max)
-#error The preprocessor symbols 'min' or 'max' are defined. If you are compiling on Windows, do #define NOMINMAX to prevent windows.h from defining these symbols.
-#endif
-
 // defined in bits/termios.h
 #undef B0
 

Eigen/SVD

@@ -13,9 +13,9 @@ namespace Eigen {
   *
   *
   *
-  * This module provides SVD decomposition for (currently) real matrices.
+  * This module provides SVD decomposition for matrices (both real and complex).
   * This decomposition is accessible via the following MatrixBase method:
-  *  - MatrixBase::svd()
+  *  - MatrixBase::jacobiSvd()
   *
   * \code
   * #include <Eigen/SVD>

Eigen/src/Cholesky/LDLT.h

@@ -158,10 +158,19 @@ template<typename _MatrixType, int _UpLo> class LDLT
     }
 
     /** \returns a solution x of \f$ A x = b \f$ using the current decomposition of A.
+      *
+      * This function also supports in-place solves using the syntax <tt>x = decompositionObject.solve(x)</tt> .
       *
       * \note_about_checking_solutions
       *
-      * \sa solveInPlace(), MatrixBase::ldlt()
+      * More precisely, this method solves \f$ A x = b \f$ using the decomposition \f$ A = P^T L D L^* P \f$
+      * by solving the systems \f$ P^T y_1 = b \f$, \f$ L y_2 = y_1 \f$, \f$ D y_3 = y_2 \f$, 
+      * \f$ L^* y_4 = y_3 \f$ and \f$ P x = y_4 \f$ in succession. If the matrix \f$ A \f$ is singular, then
+      * \f$ D \f$ will also be singular (all the other matrices are invertible). In that case, the
+      * least-square solution of \f$ D y_3 = y_2 \f$ is computed. This does not mean that this function
+      * computes the least-square solution of \f$ A x = b \f$ is \f$ A \f$ is singular.
+      *
+      * \sa MatrixBase::ldlt()
       */
     template<typename Rhs>
     inline const internal::solve_retval<LDLT, Rhs>
@@ -322,16 +331,16 @@ template<> struct ldlt_inplace<Upper>
 
 template<typename MatrixType> struct LDLT_Traits<MatrixType,Lower>
 {
-  typedef TriangularView<MatrixType, UnitLower> MatrixL;
-  typedef TriangularView<typename MatrixType::AdjointReturnType, UnitUpper> MatrixU;
+  typedef const TriangularView<const MatrixType, UnitLower> MatrixL;
+  typedef const TriangularView<const typename MatrixType::AdjointReturnType, UnitUpper> MatrixU;
   inline static MatrixL getL(const MatrixType& m) { return m; }
   inline static MatrixU getU(const MatrixType& m) { return m.adjoint(); }
 };
 
 template<typename MatrixType> struct LDLT_Traits<MatrixType,Upper>
 {
-  typedef TriangularView<typename MatrixType::AdjointReturnType, UnitLower> MatrixL;
-  typedef TriangularView<MatrixType, UnitUpper> MatrixU;
+  typedef const TriangularView<const typename MatrixType::AdjointReturnType, UnitLower> MatrixL;
+  typedef const TriangularView<const MatrixType, UnitUpper> MatrixU;
   inline static MatrixL getL(const MatrixType& m) { return m.adjoint(); }
   inline static MatrixU getU(const MatrixType& m) { return m; }
 };
@@ -376,7 +385,21 @@ struct solve_retval<LDLT<_MatrixType,_UpLo>, Rhs>
     dec().matrixL().solveInPlace(dst);
 
     // dst = D^-1 (L^-1 P b)
-    dst = dec().vectorD().asDiagonal().inverse() * dst;
+    // more precisely, use pseudo-inverse of D (see bug 241)
+    using std::abs;
+    using std::max;
+    typedef typename LDLTType::MatrixType MatrixType;
+    typedef typename LDLTType::Scalar Scalar;
+    typedef typename LDLTType::RealScalar RealScalar;
+    const Diagonal<const MatrixType> vectorD = dec().vectorD();
+    RealScalar tolerance = (max)(vectorD.array().abs().maxCoeff() * NumTraits<Scalar>::epsilon(),
+				 RealScalar(1) / NumTraits<RealScalar>::highest()); // motivated by LAPACK's xGELSS
+    for (Index i = 0; i < vectorD.size(); ++i) {
+      if(abs(vectorD(i)) > tolerance)
+	dst.row(i) /= vectorD(i);
+      else
+	dst.row(i).setZero();
+    }
 
     // dst = L^-T (D^-1 L^-1 P b)
     dec().matrixU().solveInPlace(dst);

Eigen/src/Cholesky/LLT.h

@@ -233,7 +233,7 @@ template<> struct llt_inplace<Lower>
 
     Index blockSize = size/8;
     blockSize = (blockSize/16)*16;
-    blockSize = std::min(std::max(blockSize,Index(8)), Index(128));
+    blockSize = (std::min)((std::max)(blockSize,Index(8)), Index(128));
 
     for (Index k=0; k<size; k+=blockSize)
     {
@@ -241,7 +241,7 @@ template<> struct llt_inplace<Lower>
       //       A00 |  -  |  -
       // lu  = A10 | A11 |  -
       //       A20 | A21 | A22
-      Index bs = std::min(blockSize, size-k);
+      Index bs = (std::min)(blockSize, size-k);
       Index rs = size - k - bs;
       Block<MatrixType,Dynamic,Dynamic> A11(m,k,   k,   bs,bs);
       Block<MatrixType,Dynamic,Dynamic> A21(m,k+bs,k,   rs,bs);
@@ -274,8 +274,8 @@ template<> struct llt_inplace<Upper>
 
 template<typename MatrixType> struct LLT_Traits<MatrixType,Lower>
 {
-  typedef TriangularView<MatrixType, Lower> MatrixL;
-  typedef TriangularView<typename MatrixType::AdjointReturnType, Upper> MatrixU;
+  typedef const TriangularView<const MatrixType, Lower> MatrixL;
+  typedef const TriangularView<const typename MatrixType::AdjointReturnType, Upper> MatrixU;
   inline static MatrixL getL(const MatrixType& m) { return m; }
   inline static MatrixU getU(const MatrixType& m) { return m.adjoint(); }
   static bool inplace_decomposition(MatrixType& m)
@@ -284,8 +284,8 @@ template<typename MatrixType> struct LLT_Traits<MatrixType,Lower>
 
 template<typename MatrixType> struct LLT_Traits<MatrixType,Upper>
 {
-  typedef TriangularView<typename MatrixType::AdjointReturnType, Lower> MatrixL;
-  typedef TriangularView<MatrixType, Upper> MatrixU;
+  typedef const TriangularView<const typename MatrixType::AdjointReturnType, Lower> MatrixL;
+  typedef const TriangularView<const MatrixType, Upper> MatrixU;
   inline static MatrixL getL(const MatrixType& m) { return m.adjoint(); }
   inline static MatrixU getU(const MatrixType& m) { return m; }
   static bool inplace_decomposition(MatrixType& m)

Eigen/src/Core/Array.h

@@ -68,10 +68,8 @@ class Array
     friend struct internal::conservative_resize_like_impl;
 
     using Base::m_storage;
+
   public:
-    enum { NeedsToAlign = (!(Options&DontAlign))
-                          && SizeAtCompileTime!=Dynamic && ((static_cast<int>(sizeof(Scalar))*SizeAtCompileTime)%16)==0 };
-    EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF(NeedsToAlign)
 
     using Base::base;
     using Base::coeff;

Eigen/src/Core/BandMatrix.h

@@ -87,7 +87,7 @@ class BandMatrixBase : public EigenBase<Derived>
       if (i<=supers())
       {
         start = supers()-i;
-        len = std::min(rows(),std::max<Index>(0,coeffs().rows() - (supers()-i)));
+        len = (std::min)(rows(),std::max<Index>(0,coeffs().rows() - (supers()-i)));
       }
       else if (i>=rows()-subs())
         len = std::max<Index>(0,coeffs().rows() - (i + 1 - rows() + subs()));
@@ -96,11 +96,11 @@ class BandMatrixBase : public EigenBase<Derived>
 
     /** \returns a vector expression of the main diagonal */
     inline Block<CoefficientsType,1,SizeAtCompileTime> diagonal()
-    { return Block<CoefficientsType,1,SizeAtCompileTime>(coeffs(),supers(),0,1,std::min(rows(),cols())); }
+    { return Block<CoefficientsType,1,SizeAtCompileTime>(coeffs(),supers(),0,1,(std::min)(rows(),cols())); }
 
     /** \returns a vector expression of the main diagonal (const version) */
     inline const Block<const CoefficientsType,1,SizeAtCompileTime> diagonal() const
-    { return Block<const CoefficientsType,1,SizeAtCompileTime>(coeffs(),supers(),0,1,std::min(rows(),cols())); }
+    { return Block<const CoefficientsType,1,SizeAtCompileTime>(coeffs(),supers(),0,1,(std::min)(rows(),cols())); }
 
     template<int Index> struct DiagonalIntReturnType {
       enum {
@@ -122,13 +122,13 @@ class BandMatrixBase : public EigenBase<Derived>
     /** \returns a vector expression of the \a N -th sub or super diagonal */
     template<int N> inline typename DiagonalIntReturnType<N>::Type diagonal()
     {
-      return typename DiagonalIntReturnType<N>::BuildType(coeffs(), supers()-N, std::max(0,N), 1, diagonalLength(N));
+      return typename DiagonalIntReturnType<N>::BuildType(coeffs(), supers()-N, (std::max)(0,N), 1, diagonalLength(N));
     }
 
     /** \returns a vector expression of the \a N -th sub or super diagonal */
     template<int N> inline const typename DiagonalIntReturnType<N>::Type diagonal() const
     {
-      return typename DiagonalIntReturnType<N>::BuildType(coeffs(), supers()-N, std::max(0,N), 1, diagonalLength(N));
+      return typename DiagonalIntReturnType<N>::BuildType(coeffs(), supers()-N, (std::max)(0,N), 1, diagonalLength(N));
     }
 
     /** \returns a vector expression of the \a i -th sub or super diagonal */
@@ -166,7 +166,7 @@ class BandMatrixBase : public EigenBase<Derived>
   protected:
 
     inline Index diagonalLength(Index i) const
-    { return i<0 ? std::min(cols(),rows()+i) : std::min(rows(),cols()-i); }
+    { return i<0 ? (std::min)(cols(),rows()+i) : (std::min)(rows(),cols()-i); }
 };
 
 /**
@@ -284,6 +284,7 @@ class BandMatrixWrapper : public BandMatrixBase<BandMatrixWrapper<_CoefficientsT
       : m_coeffs(coeffs),
         m_rows(rows), m_supers(supers), m_subs(subs)
     {
+      EIGEN_UNUSED_VARIABLE(cols);
       //internal::assert(coeffs.cols()==cols() && (supers()+subs()+1)==coeffs.rows());
     }
 

Eigen/src/Core/Block.h

@@ -94,7 +94,7 @@ struct traits<Block<XprType, BlockRows, BlockCols, InnerPanel, HasDirectAccess>
     MaskPacketAccessBit = (InnerSize == Dynamic || (InnerSize % packet_traits<Scalar>::size) == 0)
                        && (InnerStrideAtCompileTime == 1)
                         ? PacketAccessBit : 0,
-    MaskAlignedBit = (InnerPanel && (OuterStrideAtCompileTime!=Dynamic) && ((OuterStrideAtCompileTime % packet_traits<Scalar>::size) == 0)) ? AlignedBit : 0,
+    MaskAlignedBit = (InnerPanel && (OuterStrideAtCompileTime!=Dynamic) && (((OuterStrideAtCompileTime * int(sizeof(Scalar))) % 16) == 0)) ? AlignedBit : 0,
     FlagsLinearAccessBit = (RowsAtCompileTime == 1 || ColsAtCompileTime == 1) ? LinearAccessBit : 0,
     FlagsLvalueBit = is_lvalue<XprType>::value ? LvalueBit : 0,
     FlagsRowMajorBit = IsRowMajor ? RowMajorBit : 0,
@@ -342,7 +342,7 @@ class Block<XprType,BlockRows,BlockCols, InnerPanel,true>
     }
 
     const typename XprType::Nested m_xpr;
-    int m_outerStride;
+    Index m_outerStride;
 };
 
 

Eigen/src/Core/CwiseNullaryOp.h

@@ -742,7 +742,7 @@ struct setIdentity_impl<Derived, true>
   static EIGEN_STRONG_INLINE Derived& run(Derived& m)
   {
     m.setZero();
-    const Index size = std::min(m.rows(), m.cols());
+    const Index size = (std::min)(m.rows(), m.cols());
     for(Index i = 0; i < size; ++i) m.coeffRef(i,i) = typename Derived::Scalar(1);
     return m;
   }

Eigen/src/Core/DenseBase.h

@@ -169,8 +169,8 @@ template<typename Derived> class DenseBase
 
       IsRowMajor = int(Flags) & RowMajorBit, /**< True if this expression has row-major storage order. */
 
-      InnerSizeAtCompileTime = int(IsVectorAtCompileTime) ? SizeAtCompileTime
-                             : int(IsRowMajor) ? ColsAtCompileTime : RowsAtCompileTime,
+      InnerSizeAtCompileTime = int(IsVectorAtCompileTime) ? int(SizeAtCompileTime)
+                             : int(IsRowMajor) ? int(ColsAtCompileTime) : int(RowsAtCompileTime),
 
       CoeffReadCost = internal::traits<Derived>::CoeffReadCost,
         /**< This is a rough measure of how expensive it is to read one coefficient from

Eigen/src/Core/Diagonal.h

@@ -87,7 +87,7 @@ template<typename MatrixType, int DiagIndex> class Diagonal
     EIGEN_INHERIT_ASSIGNMENT_OPERATORS(Diagonal)
 
     inline Index rows() const
-    { return m_index.value()<0 ? std::min(m_matrix.cols(),m_matrix.rows()+m_index.value()) : std::min(m_matrix.rows(),m_matrix.cols()-m_index.value()); }
+    { return m_index.value()<0 ? (std::min)(m_matrix.cols(),m_matrix.rows()+m_index.value()) : (std::min)(m_matrix.rows(),m_matrix.cols()-m_index.value()); }
 
     inline Index cols() const { return 1; }
 

Eigen/src/Core/Dot.h

@@ -116,7 +116,9 @@ MatrixBase<Derived>::eigen2_dot(const MatrixBase<OtherDerived>& other) const
 
 //---------- implementation of L2 norm and related functions ----------
 
-/** \returns the squared \em l2 norm of *this, i.e., for vectors, the dot product of *this with itself.
+/** \returns, for vectors, the squared \em l2 norm of \c *this, and for matrices the Frobenius norm.
+  * In both cases, it consists in the sum of the square of all the matrix entries.
+  * For vectors, this is also equals to the dot product of \c *this with itself.
   *
   * \sa dot(), norm()
   */
@@ -126,7 +128,9 @@ EIGEN_STRONG_INLINE typename NumTraits<typename internal::traits<Derived>::Scala
   return internal::real((*this).cwiseAbs2().sum());
 }
 
-/** \returns the \em l2 norm of *this, i.e., for vectors, the square root of the dot product of *this with itself.
+/** \returns, for vectors, the \em l2 norm of \c *this, and for matrices the Frobenius norm.
+  * In both cases, it consists in the square root of the sum of the square of all the matrix entries.
+  * For vectors, this is also equals to the square root of the dot product of \c *this with itself.
   *
   * \sa dot(), squaredNorm()
   */

Eigen/src/Core/Functors.h

@@ -116,7 +116,7 @@ struct functor_traits<scalar_conj_product_op<LhsScalar,RhsScalar> > {
   */
 template<typename Scalar> struct scalar_min_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_min_op)
-  EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a, const Scalar& b) const { using std::min; return min(a, b); }
+  EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a, const Scalar& b) const { using std::min; return (min)(a, b); }
   template<typename Packet>
   EIGEN_STRONG_INLINE const Packet packetOp(const Packet& a, const Packet& b) const
   { return internal::pmin(a,b); }
@@ -139,7 +139,7 @@ struct functor_traits<scalar_min_op<Scalar> > {
   */
 template<typename Scalar> struct scalar_max_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_max_op)
-  EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a, const Scalar& b) const { using std::max; return max(a, b); }
+  EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a, const Scalar& b) const { using std::max; return (max)(a, b); }
   template<typename Packet>
   EIGEN_STRONG_INLINE const Packet packetOp(const Packet& a, const Packet& b) const
   { return internal::pmax(a,b); }
@@ -167,8 +167,8 @@ template<typename Scalar> struct scalar_hypot_op {
   {
     using std::max;
     using std::min;
-    Scalar p = max(_x, _y);
-    Scalar q = min(_x, _y);
+    Scalar p = (max)(_x, _y);
+    Scalar q = (min)(_x, _y);
     Scalar qp = q/p;
     return p * sqrt(Scalar(1) + qp*qp);
   }
@@ -249,7 +249,7 @@ struct functor_traits<scalar_opposite_op<Scalar> >
 template<typename Scalar> struct scalar_abs_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_abs_op)
   typedef typename NumTraits<Scalar>::Real result_type;
-  EIGEN_STRONG_INLINE const result_type operator() (const Scalar& a) const { return abs(a); }
+  EIGEN_STRONG_INLINE const result_type operator() (const Scalar& a) const { return internal::abs(a); }
   template<typename Packet>
   EIGEN_STRONG_INLINE const Packet packetOp(const Packet& a) const
   { return internal::pabs(a); }
@@ -271,7 +271,7 @@ struct functor_traits<scalar_abs_op<Scalar> >
 template<typename Scalar> struct scalar_abs2_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_abs2_op)
   typedef typename NumTraits<Scalar>::Real result_type;
-  EIGEN_STRONG_INLINE const result_type operator() (const Scalar& a) const { return abs2(a); }
+  EIGEN_STRONG_INLINE const result_type operator() (const Scalar& a) const { return internal::abs2(a); }
   template<typename Packet>
   EIGEN_STRONG_INLINE const Packet packetOp(const Packet& a) const
   { return internal::pmul(a,a); }
@@ -287,7 +287,7 @@ struct functor_traits<scalar_abs2_op<Scalar> >
   */
 template<typename Scalar> struct scalar_conjugate_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_conjugate_op)
-  EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a) const { return conj(a); }
+  EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a) const { return internal::conj(a); }
   template<typename Packet>
   EIGEN_STRONG_INLINE const Packet packetOp(const Packet& a) const { return internal::pconj(a); }
 };
@@ -324,7 +324,7 @@ template<typename Scalar>
 struct scalar_real_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_real_op)
   typedef typename NumTraits<Scalar>::Real result_type;
-  EIGEN_STRONG_INLINE result_type operator() (const Scalar& a) const { return real(a); }
+  EIGEN_STRONG_INLINE result_type operator() (const Scalar& a) const { return internal::real(a); }
 };
 template<typename Scalar>
 struct functor_traits<scalar_real_op<Scalar> >
@@ -339,7 +339,7 @@ template<typename Scalar>
 struct scalar_imag_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_imag_op)
   typedef typename NumTraits<Scalar>::Real result_type;
-  EIGEN_STRONG_INLINE result_type operator() (const Scalar& a) const { return imag(a); }
+  EIGEN_STRONG_INLINE result_type operator() (const Scalar& a) const { return internal::imag(a); }
 };
 template<typename Scalar>
 struct functor_traits<scalar_imag_op<Scalar> >
@@ -354,7 +354,7 @@ template<typename Scalar>
 struct scalar_real_ref_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_real_ref_op)
   typedef typename NumTraits<Scalar>::Real result_type;
-  EIGEN_STRONG_INLINE result_type& operator() (const Scalar& a) const { return real_ref(*const_cast<Scalar*>(&a)); }
+  EIGEN_STRONG_INLINE result_type& operator() (const Scalar& a) const { return internal::real_ref(*const_cast<Scalar*>(&a)); }
 };
 template<typename Scalar>
 struct functor_traits<scalar_real_ref_op<Scalar> >
@@ -369,7 +369,7 @@ template<typename Scalar>
 struct scalar_imag_ref_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_imag_ref_op)
   typedef typename NumTraits<Scalar>::Real result_type;
-  EIGEN_STRONG_INLINE result_type& operator() (const Scalar& a) const { return imag_ref(*const_cast<Scalar*>(&a)); }
+  EIGEN_STRONG_INLINE result_type& operator() (const Scalar& a) const { return internal::imag_ref(*const_cast<Scalar*>(&a)); }
 };
 template<typename Scalar>
 struct functor_traits<scalar_imag_ref_op<Scalar> >
@@ -383,7 +383,7 @@ struct functor_traits<scalar_imag_ref_op<Scalar> >
   */
 template<typename Scalar> struct scalar_exp_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_exp_op)
-  inline const Scalar operator() (const Scalar& a) const { return exp(a); }
+  inline const Scalar operator() (const Scalar& a) const { return internal::exp(a); }
   typedef typename packet_traits<Scalar>::type Packet;
   inline Packet packetOp(const Packet& a) const { return internal::pexp(a); }
 };
@@ -399,7 +399,7 @@ struct functor_traits<scalar_exp_op<Scalar> >
   */
 template<typename Scalar> struct scalar_log_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_log_op)
-  inline const Scalar operator() (const Scalar& a) const { return log(a); }
+  inline const Scalar operator() (const Scalar& a) const { return internal::log(a); }
   typedef typename packet_traits<Scalar>::type Packet;
   inline Packet packetOp(const Packet& a) const { return internal::plog(a); }
 };
@@ -657,7 +657,7 @@ struct functor_traits<scalar_add_op<Scalar> >
   */
 template<typename Scalar> struct scalar_sqrt_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_sqrt_op)
-  inline const Scalar operator() (const Scalar& a) const { return sqrt(a); }
+  inline const Scalar operator() (const Scalar& a) const { return internal::sqrt(a); }
   typedef typename packet_traits<Scalar>::type Packet;
   inline Packet packetOp(const Packet& a) const { return internal::psqrt(a); }
 };
@@ -675,7 +675,7 @@ struct functor_traits<scalar_sqrt_op<Scalar> >
   */
 template<typename Scalar> struct scalar_cos_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_cos_op)
-  inline Scalar operator() (const Scalar& a) const { return cos(a); }
+  inline Scalar operator() (const Scalar& a) const { return internal::cos(a); }
   typedef typename packet_traits<Scalar>::type Packet;
   inline Packet packetOp(const Packet& a) const { return internal::pcos(a); }
 };
@@ -694,7 +694,7 @@ struct functor_traits<scalar_cos_op<Scalar> >
   */
 template<typename Scalar> struct scalar_sin_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_sin_op)
-  inline const Scalar operator() (const Scalar& a) const { return sin(a); }
+  inline const Scalar operator() (const Scalar& a) const { return internal::sin(a); }
   typedef typename packet_traits<Scalar>::type Packet;
   inline Packet packetOp(const Packet& a) const { return internal::psin(a); }
 };
@@ -714,7 +714,7 @@ struct functor_traits<scalar_sin_op<Scalar> >
   */
 template<typename Scalar> struct scalar_tan_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_tan_op)
-  inline const Scalar operator() (const Scalar& a) const { return tan(a); }
+  inline const Scalar operator() (const Scalar& a) const { return internal::tan(a); }
   typedef typename packet_traits<Scalar>::type Packet;
   inline Packet packetOp(const Packet& a) const { return internal::ptan(a); }
 };
@@ -733,7 +733,7 @@ struct functor_traits<scalar_tan_op<Scalar> >
   */
 template<typename Scalar> struct scalar_acos_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_acos_op)
-  inline const Scalar operator() (const Scalar& a) const { return acos(a); }
+  inline const Scalar operator() (const Scalar& a) const { return internal::acos(a); }
   typedef typename packet_traits<Scalar>::type Packet;
   inline Packet packetOp(const Packet& a) const { return internal::pacos(a); }
 };
@@ -752,7 +752,7 @@ struct functor_traits<scalar_acos_op<Scalar> >
   */
 template<typename Scalar> struct scalar_asin_op {
   EIGEN_EMPTY_STRUCT_CTOR(scalar_asin_op)
-  inline const Scalar operator() (const Scalar& a) const { return asin(a); }
+  inline const Scalar operator() (const Scalar& a) const { return internal::asin(a); }
   typedef typename packet_traits<Scalar>::type Packet;
   inline Packet packetOp(const Packet& a) const { return internal::pasin(a); }
 };

Eigen/src/Core/Fuzzy.h

@@ -37,7 +37,7 @@ struct isApprox_selector
     using std::min;
     const typename internal::nested<Derived,2>::type nested(x);
     const typename internal::nested<OtherDerived,2>::type otherNested(y);
-    return (nested - otherNested).cwiseAbs2().sum() <= prec * prec * min(nested.cwiseAbs2().sum(), otherNested.cwiseAbs2().sum());
+    return (nested - otherNested).cwiseAbs2().sum() <= prec * prec * (min)(nested.cwiseAbs2().sum(), otherNested.cwiseAbs2().sum());
   }
 };
 

Eigen/src/Core/GenericPacketMath.h

@@ -134,12 +134,12 @@ pdiv(const Packet& a,
 /** \internal \returns the min of \a a and \a b  (coeff-wise) */
 template<typename Packet> inline Packet
 pmin(const Packet& a,
-        const Packet& b) { using std::min; return min(a, b); }
+        const Packet& b) { using std::min; return (min)(a, b); }
 
 /** \internal \returns the max of \a a and \a b  (coeff-wise) */
 template<typename Packet> inline Packet
 pmax(const Packet& a,
-        const Packet& b) { using std::max; return max(a, b); }
+        const Packet& b) { using std::max; return (max)(a, b); }
 
 /** \internal \returns the absolute value of \a a */
 template<typename Packet> inline Packet

Eigen/src/Core/Map.h

@@ -34,7 +34,7 @@
   * \tparam PlainObjectType the equivalent matrix type of the mapped data
   * \tparam MapOptions specifies whether the pointer is \c #Aligned, or \c #Unaligned.
   *                The default is \c #Unaligned.
-  * \tparam StrideType optionnally specifies strides. By default, Map assumes the memory layout
+  * \tparam StrideType optionally specifies strides. By default, Map assumes the memory layout
   *                   of an ordinary, contiguous array. This can be overridden by specifying strides.
   *                   The type passed here must be a specialization of the Stride template, see examples below.
   *
@@ -72,9 +72,9 @@
   * Example: \include Map_placement_new.cpp
   * Output: \verbinclude Map_placement_new.out
   *
-  * This class is the return type of Matrix::Map() but can also be used directly.
+  * This class is the return type of PlainObjectBase::Map() but can also be used directly.
   *
-  * \sa Matrix::Map(), \ref TopicStorageOrders
+  * \sa PlainObjectBase::Map(), \ref TopicStorageOrders
   */
 
 namespace internal {
@@ -102,7 +102,7 @@ struct traits<Map<PlainObjectType, MapOptions, StrideType> >
                            || HasNoOuterStride
                            || ( OuterStrideAtCompileTime!=Dynamic
                            && ((static_cast<int>(sizeof(Scalar))*OuterStrideAtCompileTime)%16)==0 ) ),
-    Flags0 = TraitsBase::Flags,
+    Flags0 = TraitsBase::Flags & (~NestByRefBit),
     Flags1 = IsAligned ? (int(Flags0) | AlignedBit) : (int(Flags0) & ~AlignedBit),
     Flags2 = (bool(HasNoStride) || bool(PlainObjectType::IsVectorAtCompileTime))
            ? int(Flags1) : int(Flags1 & ~LinearAccessBit),
@@ -120,7 +120,6 @@ template<typename PlainObjectType, int MapOptions, typename StrideType> class Ma
   public:
 
     typedef MapBase<Map> Base;
-
     EIGEN_DENSE_PUBLIC_INTERFACE(Map)
 
     typedef typename Base::PointerType PointerType;
@@ -181,7 +180,6 @@ template<typename PlainObjectType, int MapOptions, typename StrideType> class Ma
       PlainObjectType::Base::_check_template_params();
     }
 
-
     EIGEN_INHERIT_ASSIGNMENT_OPERATORS(Map)
 
   protected:

Eigen/src/Core/MapBase.h

@@ -170,8 +170,8 @@ template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
       EIGEN_STATIC_ASSERT(EIGEN_IMPLIES(internal::traits<Derived>::Flags&PacketAccessBit,
                                         internal::inner_stride_at_compile_time<Derived>::ret==1),
                           PACKET_ACCESS_REQUIRES_TO_HAVE_INNER_STRIDE_FIXED_TO_1);
-      eigen_assert(EIGEN_IMPLIES(internal::traits<Derived>::Flags&AlignedBit, (size_t(m_data) % (sizeof(Scalar)*internal::packet_traits<Scalar>::size)) == 0)
-        && "data is not aligned");
+      eigen_assert(EIGEN_IMPLIES(internal::traits<Derived>::Flags&AlignedBit, (size_t(m_data) % 16) == 0)
+                   && "data is not aligned");
     }
 
     PointerType m_data;

Eigen/src/Core/MathFunctions.h

@@ -378,8 +378,8 @@ struct hypot_impl
     using std::min;
     RealScalar _x = abs(x);
     RealScalar _y = abs(y);
-    RealScalar p = max(_x, _y);
-    RealScalar q = min(_x, _y);
+    RealScalar p = (max)(_x, _y);
+    RealScalar q = (min)(_x, _y);
     RealScalar qp = q/p;
     return p * sqrt(RealScalar(1) + qp*qp);
   }
@@ -737,7 +737,7 @@ struct scalar_fuzzy_default_impl<Scalar, false, false>
   static inline bool isApprox(const Scalar& x, const Scalar& y, const RealScalar& prec)
   {
     using std::min;
-    return abs(x - y) <= min(abs(x), abs(y)) * prec;
+    return abs(x - y) <= (min)(abs(x), abs(y)) * prec;
   }
   static inline bool isApproxOrLessThan(const Scalar& x, const Scalar& y, const RealScalar& prec)
   {
@@ -776,7 +776,7 @@ struct scalar_fuzzy_default_impl<Scalar, true, false>
   static inline bool isApprox(const Scalar& x, const Scalar& y, const RealScalar& prec)
   {
     using std::min;
-    return abs2(x - y) <= min(abs2(x), abs2(y)) * prec * prec;
+    return abs2(x - y) <= (min)(abs2(x), abs2(y)) * prec * prec;
   }
 };
 

Eigen/src/Core/Matrix.h

@@ -153,10 +153,6 @@ class Matrix
 
     typedef typename Base::PlainObject PlainObject;
 
-    enum { NeedsToAlign = (!(Options&DontAlign))
-                          && SizeAtCompileTime!=Dynamic && ((static_cast<int>(sizeof(Scalar))*SizeAtCompileTime)%16)==0 };
-    EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF(NeedsToAlign)
-
     using Base::base;
     using Base::coeffRef;
 

Eigen/src/Core/MatrixBase.h

@@ -111,7 +111,7 @@ template<typename Derived> class MatrixBase
 
     /** \returns the size of the main diagonal, which is min(rows(),cols()).
       * \sa rows(), cols(), SizeAtCompileTime. */
-    inline Index diagonalSize() const { return std::min(rows(),cols()); }
+    inline Index diagonalSize() const { return (std::min)(rows(),cols()); }
 
     /** \brief The plain matrix type corresponding to this expression.
       *
@@ -250,7 +250,8 @@ template<typename Derived> class MatrixBase
     
     // huuuge hack. make Eigen2's matrix.part<Diagonal>() work in eigen3. Problem: Diagonal is now a class template instead
     // of an integer constant. Solution: overload the part() method template wrt template parameters list.
-    template<template<typename T, int n> class U>
+    // Note: replacing next line by "template<template<typename T, int n> class U>" produces a mysterious error C2082 in MSVC.
+    template<template<typename, int> class U>
     const DiagonalWrapper<ConstDiagonalReturnType> part() const
     { return diagonal().asDiagonal(); }
     #endif // EIGEN2_SUPPORT

Eigen/src/Core/NumTraits.h

@@ -87,8 +87,8 @@ template<typename T> struct GenericNumTraits
     // make sure to override this for floating-point types
     return Real(0);
   }
-  inline static T highest() { return std::numeric_limits<T>::max(); }
-  inline static T lowest()  { return IsInteger ? std::numeric_limits<T>::min() : (-std::numeric_limits<T>::max()); }
+  inline static T highest() { return (std::numeric_limits<T>::max)(); }
+  inline static T lowest()  { return IsInteger ? (std::numeric_limits<T>::min)() : (-(std::numeric_limits<T>::max)()); }
   
 #ifdef EIGEN2_SUPPORT
   enum {

Eigen/src/Core/PlainObjectBase.h

@@ -34,7 +34,20 @@
 
 namespace internal {
 
-template <typename Derived, typename OtherDerived = Derived, bool IsVector = static_cast<bool>(Derived::IsVectorAtCompileTime)> struct conservative_resize_like_impl;
+template<typename Index>
+EIGEN_ALWAYS_INLINE void check_rows_cols_for_overflow(Index rows, Index cols)
+{
+  // http://hg.mozilla.org/mozilla-central/file/6c8a909977d3/xpcom/ds/CheckedInt.h#l242
+  // we assume Index is signed
+  Index max_index = (size_t(1) << (8 * sizeof(Index) - 1)) - 1; // assume Index is signed
+  bool error = (rows < 0  || cols < 0)  ? true
+             : (rows == 0 || cols == 0) ? false
+                                        : (rows > max_index / cols);
+  if (error)
+    throw_std_bad_alloc();
+}
+
+template <typename Derived, typename OtherDerived = Derived, bool IsVector = bool(Derived::IsVectorAtCompileTime)> struct conservative_resize_like_impl;
 
 template<typename MatrixTypeA, typename MatrixTypeB, bool SwapPointers> struct matrix_swap_impl;
 
@@ -84,14 +97,12 @@ class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
     template<typename StrideType> struct StridedConstMapType { typedef Eigen::Map<const Derived, Unaligned, StrideType> type; };
     template<typename StrideType> struct StridedAlignedMapType { typedef Eigen::Map<Derived, Aligned, StrideType> type; };
     template<typename StrideType> struct StridedConstAlignedMapType { typedef Eigen::Map<const Derived, Aligned, StrideType> type; };
-    
 
   protected:
     DenseStorage<Scalar, Base::MaxSizeAtCompileTime, Base::RowsAtCompileTime, Base::ColsAtCompileTime, Options> m_storage;
 
   public:
-    enum { NeedsToAlign = (!(Options&DontAlign))
-                          && SizeAtCompileTime!=Dynamic && ((static_cast<int>(sizeof(Scalar))*SizeAtCompileTime)%16)==0 };
+    enum { NeedsToAlign = SizeAtCompileTime != Dynamic && (internal::traits<Derived>::Flags & AlignedBit) != 0 };
     EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF(NeedsToAlign)
 
     Base& base() { return *static_cast<Base*>(this); }
@@ -200,11 +211,13 @@ class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
     EIGEN_STRONG_INLINE void resize(Index rows, Index cols)
     {
       #ifdef EIGEN_INITIALIZE_MATRICES_BY_ZERO
+        internal::check_rows_cols_for_overflow(rows, cols);
         Index size = rows*cols;
         bool size_changed = size != this->size();
         m_storage.resize(size, rows, cols);
         if(size_changed) EIGEN_INITIALIZE_BY_ZERO_IF_THAT_OPTION_IS_ENABLED
       #else
+        internal::check_rows_cols_for_overflow(rows, cols);
         m_storage.resize(rows*cols, rows, cols);
       #endif
     }
@@ -273,6 +286,7 @@ class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
     EIGEN_STRONG_INLINE void resizeLike(const EigenBase<OtherDerived>& _other)
     {
       const OtherDerived& other = _other.derived();
+      internal::check_rows_cols_for_overflow(other.rows(), other.cols());
       const Index othersize = other.rows()*other.cols();
       if(RowsAtCompileTime == 1)
       {
@@ -417,6 +431,7 @@ class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
       : m_storage(other.derived().rows() * other.derived().cols(), other.derived().rows(), other.derived().cols())
     {
       _check_template_params();
+      internal::check_rows_cols_for_overflow(other.derived().rows(), other.derived().cols());
       Base::operator=(other.derived());
     }
 
@@ -425,9 +440,6 @@ class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
       * while the AlignedMap() functions return aligned Map objects and thus should be called only with 16-byte-aligned
       * \a data pointers.
       *
-      * These methods do not allow to specify strides. If you need to specify strides, you have to
-      * use the Map class directly.
-      *
       * \see class Map
       */
     //@{
@@ -531,6 +543,7 @@ class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
       eigen_assert((this->size()==0 || (IsVectorAtCompileTime ? (this->size() == other.size())
                  : (rows() == other.rows() && cols() == other.cols())))
         && "Size mismatch. Automatic resizing is disabled because EIGEN_NO_AUTOMATIC_RESIZING is defined");
+      EIGEN_ONLY_USED_FOR_DEBUG(other);
       #else
       resizeLike(other);
       #endif
@@ -584,6 +597,7 @@ class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
     {
       eigen_assert(rows >= 0 && (RowsAtCompileTime == Dynamic || RowsAtCompileTime == rows)
              && cols >= 0 && (ColsAtCompileTime == Dynamic || ColsAtCompileTime == cols));
+      internal::check_rows_cols_for_overflow(rows, cols);      
       m_storage.resize(rows*cols,rows,cols);
       EIGEN_INITIALIZE_BY_ZERO_IF_THAT_OPTION_IS_ENABLED
     }
@@ -641,14 +655,15 @@ struct internal::conservative_resize_like_impl
     if ( ( Derived::IsRowMajor && _this.cols() == cols) || // row-major and we change only the number of rows
          (!Derived::IsRowMajor && _this.rows() == rows) )  // column-major and we change only the number of columns
     {
+      internal::check_rows_cols_for_overflow(rows, cols);
       _this.derived().m_storage.conservativeResize(rows*cols,rows,cols);
     }
     else
     {
       // The storage order does not allow us to use reallocation.
       typename Derived::PlainObject tmp(rows,cols);
-      const Index common_rows = std::min(rows, _this.rows());
-      const Index common_cols = std::min(cols, _this.cols());
+      const Index common_rows = (std::min)(rows, _this.rows());
+      const Index common_cols = (std::min)(cols, _this.cols());
       tmp.block(0,0,common_rows,common_cols) = _this.block(0,0,common_rows,common_cols);
       _this.derived().swap(tmp);
     }
@@ -681,8 +696,8 @@ struct internal::conservative_resize_like_impl
     {
       // The storage order does not allow us to use reallocation.
       typename Derived::PlainObject tmp(other);
-      const Index common_rows = std::min(tmp.rows(), _this.rows());
-      const Index common_cols = std::min(tmp.cols(), _this.cols());
+      const Index common_rows = (std::min)(tmp.rows(), _this.rows());
+      const Index common_cols = (std::min)(tmp.cols(), _this.cols());
       tmp.block(0,0,common_rows,common_cols) = _this.block(0,0,common_rows,common_cols);
       _this.derived().swap(tmp);
     }

Eigen/src/Core/ProductBase.h

@@ -152,7 +152,8 @@ class ProductBase : public MatrixBase<Derived>
 #else
       EIGEN_STATIC_ASSERT_SIZE_1x1(Derived)
       eigen_assert(this->rows() == 1 && this->cols() == 1);
-      return derived().coeff(row,col);
+      Matrix<Scalar,1,1> result = *this;
+      return result.coeff(row,col);
 #endif
     }
 
@@ -160,7 +161,8 @@ class ProductBase : public MatrixBase<Derived>
     {
       EIGEN_STATIC_ASSERT_SIZE_1x1(Derived)
       eigen_assert(this->rows() == 1 && this->cols() == 1);
-      return derived().coeff(i);
+      Matrix<Scalar,1,1> result = *this;
+      return result.coeff(i);
     }
 
     const Scalar& coeffRef(Index row, Index col) const
@@ -256,16 +258,16 @@ class ScaledProduct
     : Base(prod.lhs(),prod.rhs()), m_prod(prod), m_alpha(x) {}
 
     template<typename Dest>
-    inline void evalTo(Dest& dst) const { dst.setZero(); scaleAndAddTo(dst,m_alpha); }
+    inline void evalTo(Dest& dst) const { dst.setZero(); scaleAndAddTo(dst, Scalar(1)); }
 
     template<typename Dest>
-    inline void addTo(Dest& dst) const { scaleAndAddTo(dst,m_alpha); }
+    inline void addTo(Dest& dst) const { scaleAndAddTo(dst, Scalar(1)); }
 
     template<typename Dest>
-    inline void subTo(Dest& dst) const { scaleAndAddTo(dst,-m_alpha); }
+    inline void subTo(Dest& dst) const { scaleAndAddTo(dst, Scalar(-1)); }
 
     template<typename Dest>
-    inline void scaleAndAddTo(Dest& dst,Scalar alpha) const { m_prod.derived().scaleAndAddTo(dst,alpha); }
+    inline void scaleAndAddTo(Dest& dst,Scalar alpha) const { m_prod.derived().scaleAndAddTo(dst,alpha * m_alpha); }
 
     const Scalar& alpha() const { return m_alpha; }
     

Eigen/src/Core/Replicate.h

@@ -48,7 +48,10 @@ struct traits<Replicate<MatrixType,RowFactor,ColFactor> >
   typedef typename MatrixType::Scalar Scalar;
   typedef typename traits<MatrixType>::StorageKind StorageKind;
   typedef typename traits<MatrixType>::XprKind XprKind;
-  typedef typename nested<MatrixType>::type MatrixTypeNested;
+  enum {
+    Factor = (RowFactor==Dynamic || ColFactor==Dynamic) ? Dynamic : RowFactor*ColFactor
+  };
+  typedef typename nested<MatrixType,Factor>::type MatrixTypeNested;
   typedef typename remove_reference<MatrixTypeNested>::type _MatrixTypeNested;
   enum {
     RowsAtCompileTime = RowFactor==Dynamic || int(MatrixType::RowsAtCompileTime)==Dynamic
@@ -72,6 +75,8 @@ struct traits<Replicate<MatrixType,RowFactor,ColFactor> >
 template<typename MatrixType,int RowFactor,int ColFactor> class Replicate
   : public internal::dense_xpr_base< Replicate<MatrixType,RowFactor,ColFactor> >::type
 {
+    typedef typename internal::traits<Replicate>::MatrixTypeNested MatrixTypeNested;
+    typedef typename internal::traits<Replicate>::_MatrixTypeNested _MatrixTypeNested;
   public:
 
     typedef typename internal::dense_xpr_base<Replicate>::type Base;
@@ -124,7 +129,7 @@ template<typename MatrixType,int RowFactor,int ColFactor> class Replicate
 
 
   protected:
-    const typename MatrixType::Nested m_matrix;
+    const MatrixTypeNested m_matrix;
     const internal::variable_if_dynamic<Index, RowFactor> m_rowFactor;
     const internal::variable_if_dynamic<Index, ColFactor> m_colFactor;
 };

Eigen/src/Core/SolveTriangular.h

@@ -180,7 +180,7 @@ void TriangularView<MatrixType,Mode>::solveInPlace(const MatrixBase<OtherDerived
   eigen_assert(cols() == rows());
   eigen_assert( (Side==OnTheLeft && cols() == other.rows()) || (Side==OnTheRight && cols() == other.cols()) );
   eigen_assert(!(Mode & ZeroDiag));
-  eigen_assert(Mode & (Upper|Lower));
+  eigen_assert((Mode & (Upper|Lower)) != 0);
 
   enum { copy = internal::traits<OtherDerived>::Flags & RowMajorBit  && OtherDerived::IsVectorAtCompileTime };
   typedef typename internal::conditional<copy,

Eigen/src/Core/StableNorm.h

@@ -69,7 +69,7 @@ MatrixBase<Derived>::stableNorm() const
   if (bi>0)
     internal::stable_norm_kernel(this->head(bi), ssq, scale, invScale);
   for (; bi<n; bi+=blockSize)
-    internal::stable_norm_kernel(this->segment(bi,min(blockSize, n - bi)).template forceAlignedAccessIf<Alignment>(), ssq, scale, invScale);
+    internal::stable_norm_kernel(this->segment(bi,(min)(blockSize, n - bi)).template forceAlignedAccessIf<Alignment>(), ssq, scale, invScale);
   return scale * internal::sqrt(ssq);
 }
 
@@ -103,12 +103,12 @@ MatrixBase<Derived>::blueNorm() const
     // For portability, the PORT subprograms "ilmaeh" and "rlmach"
     // are used. For any specific computer, each of the assignment
     // statements can be replaced
-    nbig  = std::numeric_limits<Index>::max();            // largest integer
+    nbig  = (std::numeric_limits<Index>::max)();            // largest integer
     ibeta = std::numeric_limits<RealScalar>::radix;         // base for floating-point numbers
     it    = std::numeric_limits<RealScalar>::digits;        // number of base-beta digits in mantissa
     iemin = std::numeric_limits<RealScalar>::min_exponent;  // minimum exponent
     iemax = std::numeric_limits<RealScalar>::max_exponent;  // maximum exponent
-    rbig  = std::numeric_limits<RealScalar>::max();         // largest floating-point number
+    rbig  = (std::numeric_limits<RealScalar>::max)();         // largest floating-point number
 
     iexp  = -((1-iemin)/2);
     b1    = RealScalar(pow(RealScalar(ibeta),RealScalar(iexp)));  // lower boundary of midrange
@@ -167,8 +167,8 @@ MatrixBase<Derived>::blueNorm() const
   }
   else
     return internal::sqrt(amed);
-  asml = min(abig, amed);
-  abig = max(abig, amed);
+  asml = (min)(abig, amed);
+  abig = (max)(abig, amed);
   if(asml <= abig*relerr)
     return abig;
   else

Eigen/src/Core/Transpose.h

@@ -350,15 +350,14 @@ struct blas_traits<SelfCwiseBinaryOp<BinOp,NestedXpr,Rhs> >
 template<bool DestIsTransposed, typename OtherDerived>
 struct check_transpose_aliasing_compile_time_selector
 {
-  enum { ret = blas_traits<OtherDerived>::IsTransposed != DestIsTransposed
-  };
+  enum { ret = bool(blas_traits<OtherDerived>::IsTransposed) != DestIsTransposed };
 };
 
 template<bool DestIsTransposed, typename BinOp, typename DerivedA, typename DerivedB>
 struct check_transpose_aliasing_compile_time_selector<DestIsTransposed,CwiseBinaryOp<BinOp,DerivedA,DerivedB> >
 {
-  enum { ret =    blas_traits<DerivedA>::IsTransposed != DestIsTransposed
-               || blas_traits<DerivedB>::IsTransposed != DestIsTransposed
+  enum { ret =    bool(blas_traits<DerivedA>::IsTransposed) != DestIsTransposed
+               || bool(blas_traits<DerivedB>::IsTransposed) != DestIsTransposed
   };
 };
 
@@ -367,7 +366,7 @@ struct check_transpose_aliasing_run_time_selector
 {
   static bool run(const Scalar* dest, const OtherDerived& src)
   {
-    return (blas_traits<OtherDerived>::IsTransposed != DestIsTransposed) && (dest!=0 && dest==(Scalar*)extract_data(src));
+    return (bool(blas_traits<OtherDerived>::IsTransposed) != DestIsTransposed) && (dest!=0 && dest==(Scalar*)extract_data(src));
   }
 };
 

Eigen/src/Core/TriangularMatrix.h

@@ -111,6 +111,7 @@ template<typename Derived> class TriangularBase : public EigenBase<Derived>
       EIGEN_ONLY_USED_FOR_DEBUG(col);
       eigen_assert(col>=0 && col<cols() && row>=0 && row<rows());
       const int mode = int(Mode) & ~SelfAdjoint;
+      EIGEN_ONLY_USED_FOR_DEBUG(mode);
       eigen_assert((mode==Upper && col>=row)
                 || (mode==Lower && col<=row)
                 || ((mode==StrictlyUpper || mode==UnitUpper) && col>row)
@@ -491,7 +492,7 @@ struct triangular_assignment_selector<Derived1, Derived2, Upper, Dynamic, ClearO
   {
     for(Index j = 0; j < dst.cols(); ++j)
     {
-      Index maxi = std::min(j, dst.rows()-1);
+      Index maxi = (std::min)(j, dst.rows()-1);
       for(Index i = 0; i <= maxi; ++i)
         dst.copyCoeff(i, j, src);
       if (ClearOpposite)
@@ -511,7 +512,7 @@ struct triangular_assignment_selector<Derived1, Derived2, Lower, Dynamic, ClearO
     {
       for(Index i = j; i < dst.rows(); ++i)
         dst.copyCoeff(i, j, src);
-      Index maxi = std::min(j, dst.rows());
+      Index maxi = (std::min)(j, dst.rows());
       if (ClearOpposite)
         for(Index i = 0; i < maxi; ++i)
           dst.coeffRef(i, j) = static_cast<typename Derived1::Scalar>(0);
@@ -527,7 +528,7 @@ struct triangular_assignment_selector<Derived1, Derived2, StrictlyUpper, Dynamic
   {
     for(Index j = 0; j < dst.cols(); ++j)
     {
-      Index maxi = std::min(j, dst.rows());
+      Index maxi = (std::min)(j, dst.rows());
       for(Index i = 0; i < maxi; ++i)
         dst.copyCoeff(i, j, src);
       if (ClearOpposite)
@@ -547,7 +548,7 @@ struct triangular_assignment_selector<Derived1, Derived2, StrictlyLower, Dynamic
     {
       for(Index i = j+1; i < dst.rows(); ++i)
         dst.copyCoeff(i, j, src);
-      Index maxi = std::min(j, dst.rows()-1);
+      Index maxi = (std::min)(j, dst.rows()-1);
       if (ClearOpposite)
         for(Index i = 0; i <= maxi; ++i)
           dst.coeffRef(i, j) = static_cast<typename Derived1::Scalar>(0);
@@ -563,7 +564,7 @@ struct triangular_assignment_selector<Derived1, Derived2, UnitUpper, Dynamic, Cl
   {
     for(Index j = 0; j < dst.cols(); ++j)
     {
-      Index maxi = std::min(j, dst.rows());
+      Index maxi = (std::min)(j, dst.rows());
       for(Index i = 0; i < maxi; ++i)
         dst.copyCoeff(i, j, src);
       if (ClearOpposite)
@@ -583,7 +584,7 @@ struct triangular_assignment_selector<Derived1, Derived2, UnitLower, Dynamic, Cl
   {
     for(Index j = 0; j < dst.cols(); ++j)
     {
-      Index maxi = std::min(j, dst.rows());
+      Index maxi = (std::min)(j, dst.rows());
       for(Index i = maxi+1; i < dst.rows(); ++i)
         dst.copyCoeff(i, j, src);
       if (ClearOpposite)
@@ -795,7 +796,7 @@ bool MatrixBase<Derived>::isUpperTriangular(RealScalar prec) const
   RealScalar maxAbsOnUpperPart = static_cast<RealScalar>(-1);
   for(Index j = 0; j < cols(); ++j)
   {
-    Index maxi = std::min(j, rows()-1);
+    Index maxi = (std::min)(j, rows()-1);
     for(Index i = 0; i <= maxi; ++i)
     {
       RealScalar absValue = internal::abs(coeff(i,j));
@@ -827,7 +828,7 @@ bool MatrixBase<Derived>::isLowerTriangular(RealScalar prec) const
   RealScalar threshold = maxAbsOnLowerPart * prec;
   for(Index j = 1; j < cols(); ++j)
   {
-    Index maxi = std::min(j, rows()-1);
+    Index maxi = (std::min)(j, rows()-1);
     for(Index i = 0; i < maxi; ++i)
       if(internal::abs(coeff(i, j)) > threshold) return false;
   }

Eigen/src/Core/arch/NEON/Complex.h

@@ -27,8 +27,8 @@
 
 namespace internal {
 
-static uint32x4_t p4ui_CONJ_XOR = { 0x00000000, 0x80000000, 0x00000000, 0x80000000 };
-static uint32x2_t p2ui_CONJ_XOR = { 0x00000000, 0x80000000 };
+static uint32x4_t p4ui_CONJ_XOR = EIGEN_INIT_NEON_PACKET4(0x00000000, 0x80000000, 0x00000000, 0x80000000);
+static uint32x2_t p2ui_CONJ_XOR = EIGEN_INIT_NEON_PACKET2(0x00000000, 0x80000000);
 
 //---------- float ----------
 struct Packet2cf

Eigen/src/Core/arch/NEON/PacketMath.h

@@ -52,6 +52,16 @@ typedef uint32x4_t  Packet4ui;
 #define _EIGEN_DECLARE_CONST_Packet4i(NAME,X) \
   const Packet4i p4i_##NAME = pset1<Packet4i>(X)
 
+#if defined(__llvm__) && !defined(__clang__)
+  //Special treatment for Apple's llvm-gcc, its NEON packet types are unions
+  #define EIGEN_INIT_NEON_PACKET2(X, Y)       {{X, Y}}
+  #define EIGEN_INIT_NEON_PACKET4(X, Y, Z, W) {{X, Y, Z, W}}
+#else
+  //Default initializer for packets
+  #define EIGEN_INIT_NEON_PACKET2(X, Y)       {X, Y}
+  #define EIGEN_INIT_NEON_PACKET4(X, Y, Z, W) {X, Y, Z, W}
+#endif
+    
 #ifndef __pld
 #define __pld(x) asm volatile ( "   pld [%[addr]]\n" :: [addr] "r" (x) : "cc" );
 #endif
@@ -84,7 +94,7 @@ template<> struct packet_traits<int>    : default_packet_traits
   };
 };
 
-#if EIGEN_GNUC_AT_MOST(4,4)
+#if EIGEN_GNUC_AT_MOST(4,4) && !defined(__llvm__)
 // workaround gcc 4.2, 4.3 and 4.4 compilatin issue
 EIGEN_STRONG_INLINE float32x4_t vld1q_f32(const float* x) { return ::vld1q_f32((const float32_t*)x); }
 EIGEN_STRONG_INLINE float32x2_t vld1_f32 (const float* x) { return ::vld1_f32 ((const float32_t*)x); }
@@ -100,12 +110,12 @@ template<> EIGEN_STRONG_INLINE Packet4i pset1<Packet4i>(const int&    from)   {
 
 template<> EIGEN_STRONG_INLINE Packet4f plset<float>(const float& a)
 {
-  Packet4f countdown = { 0, 1, 2, 3 };
+  Packet4f countdown = EIGEN_INIT_NEON_PACKET4(0, 1, 2, 3);
   return vaddq_f32(pset1<Packet4f>(a), countdown);
 }
 template<> EIGEN_STRONG_INLINE Packet4i plset<int>(const int& a)
 {
-  Packet4i countdown = { 0, 1, 2, 3 };
+  Packet4i countdown = EIGEN_INIT_NEON_PACKET4(0, 1, 2, 3);
   return vaddq_s32(pset1<Packet4i>(a), countdown);
 }
 
@@ -395,25 +405,29 @@ template<> EIGEN_STRONG_INLINE int predux_max<Packet4i>(const Packet4i& a)
   return s[0];
 }
 
-template<int Offset>
-struct palign_impl<Offset,Packet4f>
-{
-  EIGEN_STRONG_INLINE static void run(Packet4f& first, const Packet4f& second)
-  {
-    if (Offset!=0)
-      first = vextq_f32(first, second, Offset);
-  }
-};
+// this PALIGN_NEON business is to work around a bug in LLVM Clang 3.0 causing incorrect compilation errors,
+// see bug 347 and this LLVM bug: http://llvm.org/bugs/show_bug.cgi?id=11074
+#define PALIGN_NEON(Offset,Type,Command) \
+template<>\
+struct palign_impl<Offset,Type>\
+{\
+    EIGEN_STRONG_INLINE static void run(Type& first, const Type& second)\
+    {\
+        if (Offset!=0)\
+            first = Command(first, second, Offset);\
+    }\
+};\
 
-template<int Offset>
-struct palign_impl<Offset,Packet4i>
-{
-  EIGEN_STRONG_INLINE static void run(Packet4i& first, const Packet4i& second)
-  {
-    if (Offset!=0)
-      first = vextq_s32(first, second, Offset);
-  }
-};
+PALIGN_NEON(0,Packet4f,vextq_f32)
+PALIGN_NEON(1,Packet4f,vextq_f32)
+PALIGN_NEON(2,Packet4f,vextq_f32)
+PALIGN_NEON(3,Packet4f,vextq_f32)
+PALIGN_NEON(0,Packet4i,vextq_s32)
+PALIGN_NEON(1,Packet4i,vextq_s32)
+PALIGN_NEON(2,Packet4i,vextq_s32)
+PALIGN_NEON(3,Packet4i,vextq_s32)
+    
+#undef PALIGN_NEON
 
 } // end namespace internal
 

Eigen/src/Core/arch/SSE/MathFunctions.h

@@ -121,7 +121,7 @@ Packet4f pexp<Packet4f>(const Packet4f& _x)
   _EIGEN_DECLARE_CONST_Packet4i(0x7f, 0x7f);
 
 
-  _EIGEN_DECLARE_CONST_Packet4f(exp_hi, 88.3762626647949f);
+  _EIGEN_DECLARE_CONST_Packet4f(exp_hi,  88.3762626647950f);
   _EIGEN_DECLARE_CONST_Packet4f(exp_lo, -88.3762626647949f);
 
   _EIGEN_DECLARE_CONST_Packet4f(cephes_LOG2EF, 1.44269504088896341f);
@@ -168,7 +168,7 @@ Packet4f pexp<Packet4f>(const Packet4f& _x)
   y = pmadd(y, z, x);
   y = padd(y, p4f_1);
 
-  /* build 2^n */
+  // build 2^n
   emm0 = _mm_cvttps_epi32(fx);
   emm0 = _mm_add_epi32(emm0, p4i_0x7f);
   emm0 = _mm_slli_epi32(emm0, 23);

Eigen/src/Core/products/GeneralBlockPanelKernel.h

@@ -30,18 +30,24 @@ namespace internal {
 template<typename _LhsScalar, typename _RhsScalar, bool _ConjLhs=false, bool _ConjRhs=false>
 class gebp_traits;
 
+/** \internal \returns b if a<=0, and returns a otherwise. */
+inline std::ptrdiff_t manage_caching_sizes_helper(std::ptrdiff_t a, std::ptrdiff_t b)
+{
+  return a<=0 ? b : a;
+}
+
 /** \internal */
 inline void manage_caching_sizes(Action action, std::ptrdiff_t* l1=0, std::ptrdiff_t* l2=0)
 {
   static std::ptrdiff_t m_l1CacheSize = 0;
   static std::ptrdiff_t m_l2CacheSize = 0;
+#ifdef _OPENMP
+  #pragma omp threadprivate(m_l1CacheSize,m_l2CacheSize)
+#endif
   if(m_l1CacheSize==0)
   {
-    m_l1CacheSize = queryL1CacheSize();
-    m_l2CacheSize = queryTopLevelCacheSize();
-
-    if(m_l1CacheSize<=0) m_l1CacheSize = 8 * 1024;
-    if(m_l2CacheSize<=0) m_l2CacheSize = 1 * 1024 * 1024;
+    m_l1CacheSize = manage_caching_sizes_helper(queryL1CacheSize(),8 * 1024);
+    m_l2CacheSize = manage_caching_sizes_helper(queryTopLevelCacheSize(),1*1024*1024);
   }
 
   if(action==SetAction)
@@ -81,6 +87,7 @@ inline void manage_caching_sizes(Action action, std::ptrdiff_t* l1=0, std::ptrdi
 template<typename LhsScalar, typename RhsScalar, int KcFactor>
 void computeProductBlockingSizes(std::ptrdiff_t& k, std::ptrdiff_t& m, std::ptrdiff_t& n)
 {
+  EIGEN_UNUSED_VARIABLE(n);
   // Explanations:
   // Let's recall the product algorithms form kc x nc horizontal panels B' on the rhs and
   // mc x kc blocks A' on the lhs. A' has to fit into L2 cache. Moreover, B' is processed
@@ -102,7 +109,6 @@ void computeProductBlockingSizes(std::ptrdiff_t& k, std::ptrdiff_t& m, std::ptrd
   k = std::min<std::ptrdiff_t>(k, l1/kdiv);
   std::ptrdiff_t _m = k>0 ? l2/(4 * sizeof(LhsScalar) * k) : 0;
   if(_m<m) m = _m & mr_mask;
-  n = n;
 }
 
 template<typename LhsScalar, typename RhsScalar>
@@ -118,14 +124,14 @@ inline void computeProductBlockingSizes(std::ptrdiff_t& k, std::ptrdiff_t& m, st
   // FIXME (a bit overkill maybe ?)
 
   template<typename CJ, typename A, typename B, typename C, typename T> struct gebp_madd_selector {
-    EIGEN_STRONG_INLINE EIGEN_ALWAYS_INLINE_ATTRIB static void run(const CJ& cj, A& a, B& b, C& c, T& /*t*/)
+    EIGEN_ALWAYS_INLINE static void run(const CJ& cj, A& a, B& b, C& c, T& /*t*/)
     {
       c = cj.pmadd(a,b,c);
     }
   };
 
   template<typename CJ, typename T> struct gebp_madd_selector<CJ,T,T,T,T> {
-    EIGEN_STRONG_INLINE EIGEN_ALWAYS_INLINE_ATTRIB static void run(const CJ& cj, T& a, T& b, T& c, T& t)
+    EIGEN_ALWAYS_INLINE static void run(const CJ& cj, T& a, T& b, T& c, T& t)
     {
       t = b; t = cj.pmul(a,t); c = padd(c,t);
     }

Eigen/src/Core/products/GeneralMatrixMatrix.h

@@ -78,7 +78,7 @@ static void run(Index rows, Index cols, Index depth,
   typedef gebp_traits<LhsScalar,RhsScalar> Traits;
 
   Index kc = blocking.kc();                 // cache block size along the K direction
-  Index mc = std::min(rows,blocking.mc());  // cache block size along the M direction
+  Index mc = (std::min)(rows,blocking.mc());  // cache block size along the M direction
   //Index nc = blocking.nc(); // cache block size along the N direction
 
   gemm_pack_lhs<LhsScalar, Index, Traits::mr, Traits::LhsProgress, LhsStorageOrder> pack_lhs;
@@ -103,7 +103,7 @@ static void run(Index rows, Index cols, Index depth,
     // For each horizontal panel of the rhs, and corresponding vertical panel of the lhs...
     for(Index k=0; k<depth; k+=kc)
     {
-      const Index actual_kc = std::min(k+kc,depth)-k; // => rows of B', and cols of the A'
+      const Index actual_kc = (std::min)(k+kc,depth)-k; // => rows of B', and cols of the A'
 
       // In order to reduce the chance that a thread has to wait for the other,
       // let's start by packing A'.
@@ -140,7 +140,7 @@ static void run(Index rows, Index cols, Index depth,
       // Then keep going as usual with the remaining A'
       for(Index i=mc; i<rows; i+=mc)
       {
-        const Index actual_mc = std::min(i+mc,rows)-i;
+        const Index actual_mc = (std::min)(i+mc,rows)-i;
 
         // pack A_i,k to A'
         pack_lhs(blockA, &lhs(i,k), lhsStride, actual_kc, actual_mc);
@@ -174,7 +174,7 @@ static void run(Index rows, Index cols, Index depth,
     // (==GEMM_VAR1)
     for(Index k2=0; k2<depth; k2+=kc)
     {
-      const Index actual_kc = std::min(k2+kc,depth)-k2;
+      const Index actual_kc = (std::min)(k2+kc,depth)-k2;
 
       // OK, here we have selected one horizontal panel of rhs and one vertical panel of lhs.
       // => Pack rhs's panel into a sequential chunk of memory (L2 caching)
@@ -187,7 +187,7 @@ static void run(Index rows, Index cols, Index depth,
       // (==GEPP_VAR1)
       for(Index i2=0; i2<rows; i2+=mc)
       {
-        const Index actual_mc = std::min(i2+mc,rows)-i2;
+        const Index actual_mc = (std::min)(i2+mc,rows)-i2;
 
         // We pack the lhs's block into a sequential chunk of memory (L1 caching)
         // Note that this block will be read a very high number of times, which is equal to the number of

Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h

@@ -96,14 +96,14 @@ struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,
 
     for(Index k2=0; k2<depth; k2+=kc)
     {
-      const Index actual_kc = std::min(k2+kc,depth)-k2;
+      const Index actual_kc = (std::min)(k2+kc,depth)-k2;
 
       // note that the actual rhs is the transpose/adjoint of mat
       pack_rhs(blockB, &rhs(k2,0), rhsStride, actual_kc, size);
 
       for(Index i2=0; i2<size; i2+=mc)
       {
-        const Index actual_mc = std::min(i2+mc,size)-i2;
+        const Index actual_mc = (std::min)(i2+mc,size)-i2;
 
         pack_lhs(blockA, &lhs(i2, k2), lhsStride, actual_kc, actual_mc);
 
@@ -112,7 +112,7 @@ struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,
         //  2 - the actual_mc x actual_mc symmetric block => processed with a special kernel
         //  3 - after the diagonal => processed with gebp or skipped
         if (UpLo==Lower)
-          gebp(res+i2, resStride, blockA, blockB, actual_mc, actual_kc, std::min(size,i2), alpha,
+          gebp(res+i2, resStride, blockA, blockB, actual_mc, actual_kc, (std::min)(size,i2), alpha,
                -1, -1, 0, 0, allocatedBlockB);
 
         sybb(res+resStride*i2 + i2, resStride, blockA, blockB + actual_kc*i2, actual_mc, actual_kc, alpha, allocatedBlockB);
@@ -120,7 +120,7 @@ struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,
         if (UpLo==Upper)
         {
           Index j2 = i2+actual_mc;
-          gebp(res+resStride*j2+i2, resStride, blockA, blockB+actual_kc*j2, actual_mc, actual_kc, std::max(Index(0), size-j2), alpha,
+          gebp(res+resStride*j2+i2, resStride, blockA, blockB+actual_kc*j2, actual_mc, actual_kc, (std::max)(Index(0), size-j2), alpha,
                -1, -1, 0, 0, allocatedBlockB);
         }
       }

Eigen/src/Core/products/GeneralMatrixVector.h

@@ -134,7 +134,7 @@ EIGEN_DONT_INLINE static void run(
     }
     else
     {
-      skipColumns = std::min(skipColumns,cols);
+      skipColumns = (std::min)(skipColumns,cols);
       // note that the skiped columns are processed later.
     }
 
@@ -386,7 +386,7 @@ EIGEN_DONT_INLINE static void run(
     }
     else
     {
-      skipRows = std::min(skipRows,Index(rows));
+      skipRows = (std::min)(skipRows,Index(rows));
       // note that the skiped columns are processed later.
     }
     eigen_internal_assert(  alignmentPattern==NoneAligned

Eigen/src/Core/products/SelfadjointMatrixMatrix.h

@@ -114,7 +114,7 @@ struct symm_pack_rhs
     }
 
     // second part: diagonal block
-    for(Index j2=k2; j2<std::min(k2+rows,packet_cols); j2+=nr)
+    for(Index j2=k2; j2<(std::min)(k2+rows,packet_cols); j2+=nr)
     {
       // again we can split vertically in three different parts (transpose, symmetric, normal)
       // transpose
@@ -179,7 +179,7 @@ struct symm_pack_rhs
     for(Index j2=packet_cols; j2<cols; ++j2)
     {
       // transpose
-      Index half = std::min(end_k,j2);
+      Index half = (std::min)(end_k,j2);
       for(Index k=k2; k<half; k++)
       {
         blockB[count] = conj(rhs(j2,k));
@@ -261,7 +261,7 @@ struct product_selfadjoint_matrix<Scalar,Index,LhsStorageOrder,true,ConjugateLhs
     Index nc = cols;  // cache block size along the N direction
     computeProductBlockingSizes<Scalar,Scalar>(kc, mc, nc);
     // kc must smaller than mc
-    kc = std::min(kc,mc);
+    kc = (std::min)(kc,mc);
 
     std::size_t sizeW = kc*Traits::WorkSpaceFactor;
     std::size_t sizeB = sizeW + kc*cols;
@@ -276,7 +276,7 @@ struct product_selfadjoint_matrix<Scalar,Index,LhsStorageOrder,true,ConjugateLhs
 
     for(Index k2=0; k2<size; k2+=kc)
     {
-      const Index actual_kc = std::min(k2+kc,size)-k2;
+      const Index actual_kc = (std::min)(k2+kc,size)-k2;
 
       // we have selected one row panel of rhs and one column panel of lhs
       // pack rhs's panel into a sequential chunk of memory
@@ -289,7 +289,7 @@ struct product_selfadjoint_matrix<Scalar,Index,LhsStorageOrder,true,ConjugateLhs
       //  3 - the panel below the diagonal block => generic packed copy
       for(Index i2=0; i2<k2; i2+=mc)
       {
-        const Index actual_mc = std::min(i2+mc,k2)-i2;
+        const Index actual_mc = (std::min)(i2+mc,k2)-i2;
         // transposed packed copy
         pack_lhs_transposed(blockA, &lhs(k2, i2), lhsStride, actual_kc, actual_mc);
 
@@ -297,7 +297,7 @@ struct product_selfadjoint_matrix<Scalar,Index,LhsStorageOrder,true,ConjugateLhs
       }
       // the block diagonal
       {
-        const Index actual_mc = std::min(k2+kc,size)-k2;
+        const Index actual_mc = (std::min)(k2+kc,size)-k2;
         // symmetric packed copy
         pack_lhs(blockA, &lhs(k2,k2), lhsStride, actual_kc, actual_mc);
 
@@ -306,7 +306,7 @@ struct product_selfadjoint_matrix<Scalar,Index,LhsStorageOrder,true,ConjugateLhs
 
       for(Index i2=k2+kc; i2<size; i2+=mc)
       {
-        const Index actual_mc = std::min(i2+mc,size)-i2;
+        const Index actual_mc = (std::min)(i2+mc,size)-i2;
         gemm_pack_lhs<Scalar, Index, Traits::mr, Traits::LhsProgress, LhsStorageOrder,false>()
           (blockA, &lhs(i2, k2), lhsStride, actual_kc, actual_mc);
 
@@ -352,14 +352,14 @@ struct product_selfadjoint_matrix<Scalar,Index,LhsStorageOrder,false,ConjugateLh
 
     for(Index k2=0; k2<size; k2+=kc)
     {
-      const Index actual_kc = std::min(k2+kc,size)-k2;
+      const Index actual_kc = (std::min)(k2+kc,size)-k2;
 
       pack_rhs(blockB, _rhs, rhsStride, actual_kc, cols, k2);
 
       // => GEPP
       for(Index i2=0; i2<rows; i2+=mc)
       {
-        const Index actual_mc = std::min(i2+mc,rows)-i2;
+        const Index actual_mc = (std::min)(i2+mc,rows)-i2;
         pack_lhs(blockA, &lhs(i2, k2), lhsStride, actual_kc, actual_mc);
 
         gebp_kernel(res+i2, resStride, blockA, blockB, actual_mc, actual_kc, cols, alpha);

Eigen/src/Core/products/SelfadjointMatrixVector.h

@@ -70,7 +70,7 @@ static EIGEN_DONT_INLINE void product_selfadjoint_vector(
       rhs[i] = *it;
   }
 
-  Index bound = std::max(Index(0),size-8) & 0xfffffffe;
+  Index bound = (std::max)(Index(0),size-8) & 0xfffffffe;
   if (FirstTriangular)
     bound = size - bound;
 

Eigen/src/Core/products/TriangularMatrixMatrix.h

@@ -112,7 +112,7 @@ struct product_triangular_matrix_matrix<Scalar,Index,Mode,true,
     Scalar alpha)
   {
     // strip zeros
-    Index diagSize  = std::min(_rows,_depth);
+    Index diagSize  = (std::min)(_rows,_depth);
     Index rows      = IsLower ? _rows : diagSize;
     Index depth     = IsLower ? diagSize : _depth;
     Index cols      = _cols;
@@ -145,7 +145,7 @@ struct product_triangular_matrix_matrix<Scalar,Index,Mode,true,
         IsLower ? k2>0 : k2<depth;
         IsLower ? k2-=kc : k2+=kc)
     {
-      Index actual_kc = std::min(IsLower ? k2 : depth-k2, kc);
+      Index actual_kc = (std::min)(IsLower ? k2 : depth-k2, kc);
       Index actual_k2 = IsLower ? k2-actual_kc : k2;
 
       // align blocks with the end of the triangular part for trapezoidal lhs
@@ -203,10 +203,10 @@ struct product_triangular_matrix_matrix<Scalar,Index,Mode,true,
       // the part below (lower case) or above (upper case) the diagonal => GEPP
       {
         Index start = IsLower ? k2 : 0;
-        Index end   = IsLower ? rows : std::min(actual_k2,rows);
+        Index end   = IsLower ? rows : (std::min)(actual_k2,rows);
         for(Index i2=start; i2<end; i2+=mc)
         {
-          const Index actual_mc = std::min(i2+mc,end)-i2;
+          const Index actual_mc = (std::min)(i2+mc,end)-i2;
           gemm_pack_lhs<Scalar, Index, Traits::mr,Traits::LhsProgress, LhsStorageOrder,false>()
             (blockA, &lhs(i2, actual_k2), lhsStride, actual_kc, actual_mc);
 
@@ -240,7 +240,7 @@ struct product_triangular_matrix_matrix<Scalar,Index,Mode,false,
     Scalar alpha)
   {
     // strip zeros
-    Index diagSize  = std::min(_cols,_depth);
+    Index diagSize  = (std::min)(_cols,_depth);
     Index rows      = _rows;
     Index depth     = IsLower ? _depth : diagSize;
     Index cols      = IsLower ? diagSize : _cols;
@@ -275,7 +275,7 @@ struct product_triangular_matrix_matrix<Scalar,Index,Mode,false,
         IsLower ? k2<depth  : k2>0;
         IsLower ? k2+=kc   : k2-=kc)
     {
-      Index actual_kc = std::min(IsLower ? depth-k2 : k2, kc);
+      Index actual_kc = (std::min)(IsLower ? depth-k2 : k2, kc);
       Index actual_k2 = IsLower ? k2 : k2-actual_kc;
 
       // align blocks with the end of the triangular part for trapezoidal rhs
@@ -286,7 +286,7 @@ struct product_triangular_matrix_matrix<Scalar,Index,Mode,false,
       }
 
       // remaining size
-      Index rs = IsLower ? std::min(cols,actual_k2) : cols - k2;
+      Index rs = IsLower ? (std::min)(cols,actual_k2) : cols - k2;
       // size of the triangular part
       Index ts = (IsLower && actual_k2>=cols) ? 0 : actual_kc;
 
@@ -327,7 +327,7 @@ struct product_triangular_matrix_matrix<Scalar,Index,Mode,false,
 
       for (Index i2=0; i2<rows; i2+=mc)
       {
-        const Index actual_mc = std::min(mc,rows-i2);
+        const Index actual_mc = (std::min)(mc,rows-i2);
         pack_lhs(blockA, &lhs(i2, actual_k2), lhsStride, actual_kc, actual_mc);
 
         // triangular kernel

Eigen/src/Core/products/TriangularMatrixVector.h

@@ -56,7 +56,7 @@ struct product_triangular_matrix_vector<Index,Mode,LhsScalar,ConjLhs,RhsScalar,C
 
     for (Index pi=0; pi<cols; pi+=PanelWidth)
     {
-      Index actualPanelWidth = std::min(PanelWidth, cols-pi);
+      Index actualPanelWidth = (std::min)(PanelWidth, cols-pi);
       for (Index k=0; k<actualPanelWidth; ++k)
       {
         Index i = pi + k;
@@ -107,7 +107,7 @@ struct product_triangular_matrix_vector<Index,Mode,LhsScalar,ConjLhs,RhsScalar,C
     
     for (Index pi=0; pi<cols; pi+=PanelWidth)
     {
-      Index actualPanelWidth = std::min(PanelWidth, cols-pi);
+      Index actualPanelWidth = (std::min)(PanelWidth, cols-pi);
       for (Index k=0; k<actualPanelWidth; ++k)
       {
         Index i = pi + k;

Eigen/src/Core/products/TriangularSolverMatrix.h

@@ -85,7 +85,7 @@ struct triangular_solve_matrix<Scalar,Index,OnTheLeft,Mode,Conjugate,TriStorageO
         IsLower ? k2<size : k2>0;
         IsLower ? k2+=kc : k2-=kc)
     {
-      const Index actual_kc = std::min(IsLower ? size-k2 : k2, kc);
+      const Index actual_kc = (std::min)(IsLower ? size-k2 : k2, kc);
 
       // We have selected and packed a big horizontal panel R1 of rhs. Let B be the packed copy of this panel,
       // and R2 the remaining part of rhs. The corresponding vertical panel of lhs is split into
@@ -164,7 +164,7 @@ struct triangular_solve_matrix<Scalar,Index,OnTheLeft,Mode,Conjugate,TriStorageO
         Index end   = IsLower ? size : k2-kc;
         for(Index i2=start; i2<end; i2+=mc)
         {
-          const Index actual_mc = std::min(mc,end-i2);
+          const Index actual_mc = (std::min)(mc,end-i2);
           if (actual_mc>0)
           {
             pack_lhs(blockA, &tri(i2, IsLower ? k2 : k2-kc), triStride, actual_kc, actual_mc);
@@ -222,7 +222,7 @@ struct triangular_solve_matrix<Scalar,Index,OnTheRight,Mode,Conjugate,TriStorage
         IsLower ? k2>0 : k2<size;
         IsLower ? k2-=kc : k2+=kc)
     {
-      const Index actual_kc = std::min(IsLower ? k2 : size-k2, kc);
+      const Index actual_kc = (std::min)(IsLower ? k2 : size-k2, kc);
       Index actual_k2 = IsLower ? k2-actual_kc : k2 ;
 
       Index startPanel = IsLower ? 0 : k2+actual_kc;
@@ -251,7 +251,7 @@ struct triangular_solve_matrix<Scalar,Index,OnTheRight,Mode,Conjugate,TriStorage
 
       for(Index i2=0; i2<rows; i2+=mc)
       {
-        const Index actual_mc = std::min(mc,rows-i2);
+        const Index actual_mc = (std::min)(mc,rows-i2);
 
         // triangular solver kernel
         {

Eigen/src/Core/products/TriangularSolverVector.h

@@ -60,7 +60,7 @@ struct triangular_solve_vector<LhsScalar, RhsScalar, Index, OnTheLeft, Mode, Con
         IsLower ? pi<size : pi>0;
         IsLower ? pi+=PanelWidth : pi-=PanelWidth)
     {
-      Index actualPanelWidth = std::min(IsLower ? size - pi : pi, PanelWidth);
+      Index actualPanelWidth = (std::min)(IsLower ? size - pi : pi, PanelWidth);
 
       Index r = IsLower ? pi : size - pi; // remaining size
       if (r > 0)
@@ -114,7 +114,7 @@ struct triangular_solve_vector<LhsScalar, RhsScalar, Index, OnTheLeft, Mode, Con
         IsLower ? pi<size : pi>0;
         IsLower ? pi+=PanelWidth : pi-=PanelWidth)
     {
-      Index actualPanelWidth = std::min(IsLower ? size - pi : pi, PanelWidth);
+      Index actualPanelWidth = (std::min)(IsLower ? size - pi : pi, PanelWidth);
       Index startBlock = IsLower ? pi : pi-actualPanelWidth;
       Index endBlock = IsLower ? pi + actualPanelWidth : 0;
 

Eigen/src/Core/util/Macros.h

@@ -1,3 +1,4 @@
+
 // This file is part of Eigen, a lightweight C++ template library
 // for linear algebra.
 //
@@ -28,7 +29,7 @@
 
 #define EIGEN_WORLD_VERSION 3
 #define EIGEN_MAJOR_VERSION 0
-#define EIGEN_MINOR_VERSION 1
+#define EIGEN_MINOR_VERSION 7
 
 #define EIGEN_VERSION_AT_LEAST(x,y,z) (EIGEN_WORLD_VERSION>x || (EIGEN_WORLD_VERSION>=x && \
                                       (EIGEN_MAJOR_VERSION>y || (EIGEN_MAJOR_VERSION>=y && \
@@ -45,7 +46,7 @@
   #define EIGEN_GNUC_AT_MOST(x,y) 0
 #endif
 
-#if EIGEN_GNUC_AT_MOST(4,3)
+#if EIGEN_GNUC_AT_MOST(4,3) && !defined(__clang__)
   // see bug 89
   #define EIGEN_SAFE_TO_USE_STANDARD_ASSERT_MACRO 0
 #else
@@ -130,31 +131,34 @@
 #define EIGEN_MAKESTRING2(a) #a
 #define EIGEN_MAKESTRING(a) EIGEN_MAKESTRING2(a)
 
-// EIGEN_ALWAYS_INLINE_ATTRIB should be use in the declaration of function
-// which should be inlined even in debug mode.
-// FIXME with the always_inline attribute,
-// gcc 3.4.x reports the following compilation error:
-//   Eval.h:91: sorry, unimplemented: inlining failed in call to 'const Eigen::Eval<Derived> Eigen::MatrixBase<Scalar, Derived>::eval() const'
-//    : function body not available
-#if EIGEN_GNUC_AT_LEAST(4,0)
-#define EIGEN_ALWAYS_INLINE_ATTRIB __attribute__((always_inline))
-#else
-#define EIGEN_ALWAYS_INLINE_ATTRIB
-#endif
-
 #if EIGEN_GNUC_AT_LEAST(4,1) && !defined(__clang__) && !defined(__INTEL_COMPILER)
 #define EIGEN_FLATTEN_ATTRIB __attribute__((flatten))
 #else
 #define EIGEN_FLATTEN_ATTRIB
 #endif
 
-// EIGEN_FORCE_INLINE means "inline as much as possible"
+// EIGEN_STRONG_INLINE is a stronger version of the inline, using __forceinline on MSVC,
+// but it still doesn't use GCC's always_inline. This is useful in (common) situations where MSVC needs forceinline
+// but GCC is still doing fine with just inline.
 #if (defined _MSC_VER) || (defined __INTEL_COMPILER)
 #define EIGEN_STRONG_INLINE __forceinline
 #else
 #define EIGEN_STRONG_INLINE inline
 #endif
 
+// EIGEN_ALWAYS_INLINE is the stronget, it has the effect of making the function inline and adding every possible
+// attribute to maximize inlining. This should only be used when really necessary: in particular,
+// it uses __attribute__((always_inline)) on GCC, which most of the time is useless and can severely harm compile times.
+// FIXME with the always_inline attribute,
+// gcc 3.4.x reports the following compilation error:
+//   Eval.h:91: sorry, unimplemented: inlining failed in call to 'const Eigen::Eval<Derived> Eigen::MatrixBase<Scalar, Derived>::eval() const'
+//    : function body not available
+#if EIGEN_GNUC_AT_LEAST(4,0)
+#define EIGEN_ALWAYS_INLINE __attribute__((always_inline)) inline
+#else
+#define EIGEN_ALWAYS_INLINE EIGEN_STRONG_INLINE
+#endif
+
 #if (defined __GNUC__)
 #define EIGEN_DONT_INLINE __attribute__((noinline))
 #elif (defined _MSC_VER)
@@ -249,7 +253,7 @@
 #define EIGEN_UNUSED_VARIABLE(var) (void)var;
 
 #if (defined __GNUC__)
-#define EIGEN_ASM_COMMENT(X)  asm("#"X)
+#define EIGEN_ASM_COMMENT(X)  asm("#" X)
 #else
 #define EIGEN_ASM_COMMENT(X)
 #endif
@@ -261,7 +265,7 @@
  * If we made alignment depend on whether or not EIGEN_VECTORIZE is defined, it would be impossible to link
  * vectorized and non-vectorized code.
  */
-#if (defined __GNUC__) || (defined __PGI) || (defined __IBMCPP__)
+#if (defined __GNUC__) || (defined __PGI) || (defined __IBMCPP__) || (defined __ARMCC_VERSION)
   #define EIGEN_ALIGN_TO_BOUNDARY(n) __attribute__((aligned(n)))
 #elif (defined _MSC_VER)
   #define EIGEN_ALIGN_TO_BOUNDARY(n) __declspec(align(n))
@@ -399,7 +403,7 @@
 #define EIGEN_MAKE_CWISE_BINARY_OP(METHOD,FUNCTOR) \
   template<typename OtherDerived> \
   EIGEN_STRONG_INLINE const CwiseBinaryOp<FUNCTOR<Scalar>, const Derived, const OtherDerived> \
-  METHOD(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const \
+  (METHOD)(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const \
   { \
     return CwiseBinaryOp<FUNCTOR<Scalar>, const Derived, const OtherDerived>(derived(), other.derived()); \
   }

Eigen/src/Core/util/Memory.h

@@ -82,6 +82,16 @@
 
 namespace internal {
 
+inline void throw_std_bad_alloc()
+{
+  #ifdef EIGEN_EXCEPTIONS
+    throw std::bad_alloc();
+  #else
+    std::size_t huge = -1;
+    new int[huge];
+  #endif
+}
+
 /*****************************************************************************
 *** Implementation of handmade aligned functions                           ***
 *****************************************************************************/
@@ -156,7 +166,7 @@ inline void* generic_aligned_realloc(void* ptr, size_t size, size_t old_size)
 
   if (ptr != 0)
   {
-    std::memcpy(newptr, ptr, std::min(size,old_size));
+    std::memcpy(newptr, ptr, (std::min)(size,old_size));
     aligned_free(ptr);
   }
 
@@ -192,7 +202,7 @@ inline void check_that_malloc_is_allowed()
 #endif
 
 /** \internal Allocates \a size bytes. The returned pointer is guaranteed to have 16 bytes alignment.
-  * On allocation error, the returned pointer is null, and if exceptions are enabled then a std::bad_alloc is thrown.
+  * On allocation error, the returned pointer is null, and std::bad_alloc is thrown.
   */
 inline void* aligned_malloc(size_t size)
 {
@@ -213,10 +223,9 @@ inline void* aligned_malloc(size_t size)
     result = handmade_aligned_malloc(size);
   #endif
 
-  #ifdef EIGEN_EXCEPTIONS
-    if(result == 0)
-      throw std::bad_alloc();
-  #endif
+  if(!result && size)
+    throw_std_bad_alloc();
+
   return result;
 }
 
@@ -241,7 +250,7 @@ inline void aligned_free(void *ptr)
 /**
 * \internal
 * \brief Reallocates an aligned block of memory.
-* \throws std::bad_alloc if EIGEN_EXCEPTIONS are defined.
+* \throws std::bad_alloc on allocation failure
 **/
 inline void* aligned_realloc(void *ptr, size_t new_size, size_t old_size)
 {
@@ -269,10 +278,9 @@ inline void* aligned_realloc(void *ptr, size_t new_size, size_t old_size)
   result = handmade_aligned_realloc(ptr,new_size,old_size);
 #endif
 
-#ifdef EIGEN_EXCEPTIONS
-  if (result==0 && new_size!=0)
-    throw std::bad_alloc();
-#endif
+  if (!result && new_size)
+    throw_std_bad_alloc();
+
   return result;
 }
 
@@ -281,7 +289,7 @@ inline void* aligned_realloc(void *ptr, size_t new_size, size_t old_size)
 *****************************************************************************/
 
 /** \internal Allocates \a size bytes. If Align is true, then the returned ptr is 16-byte-aligned.
-  * On allocation error, the returned pointer is null, and if exceptions are enabled then a std::bad_alloc is thrown.
+  * On allocation error, the returned pointer is null, and a std::bad_alloc is thrown.
   */
 template<bool Align> inline void* conditional_aligned_malloc(size_t size)
 {
@@ -293,9 +301,8 @@ template<> inline void* conditional_aligned_malloc<false>(size_t size)
   check_that_malloc_is_allowed();
 
   void *result = std::malloc(size);
-  #ifdef EIGEN_EXCEPTIONS
-    if(!result) throw std::bad_alloc();
-  #endif
+  if(!result && size)
+    throw_std_bad_alloc();
   return result;
 }
 
@@ -347,18 +354,27 @@ template<typename T> inline void destruct_elements_of_array(T *ptr, size_t size)
 *** Implementation of aligned new/delete-like functions                    ***
 *****************************************************************************/
 
+template<typename T>
+EIGEN_ALWAYS_INLINE void check_size_for_overflow(size_t size)
+{
+  if(size > size_t(-1) / sizeof(T))
+    throw_std_bad_alloc();
+}
+
 /** \internal Allocates \a size objects of type T. The returned pointer is guaranteed to have 16 bytes alignment.
-  * On allocation error, the returned pointer is undefined, but if exceptions are enabled then a std::bad_alloc is thrown.
+  * On allocation error, the returned pointer is undefined, but a std::bad_alloc is thrown.
   * The default constructor of T is called.
   */
 template<typename T> inline T* aligned_new(size_t size)
 {
+  check_size_for_overflow<T>(size);
   T *result = reinterpret_cast<T*>(aligned_malloc(sizeof(T)*size));
   return construct_elements_of_array(result, size);
 }
 
 template<typename T, bool Align> inline T* conditional_aligned_new(size_t size)
 {
+  check_size_for_overflow<T>(size);
   T *result = reinterpret_cast<T*>(conditional_aligned_malloc<Align>(sizeof(T)*size));
   return construct_elements_of_array(result, size);
 }
@@ -383,6 +399,8 @@ template<typename T, bool Align> inline void conditional_aligned_delete(T *ptr,
 
 template<typename T, bool Align> inline T* conditional_aligned_realloc_new(T* pts, size_t new_size, size_t old_size)
 {
+  check_size_for_overflow<T>(new_size);
+  check_size_for_overflow<T>(old_size);
   if(new_size < old_size)
     destruct_elements_of_array(pts+new_size, old_size-new_size);
   T *result = reinterpret_cast<T*>(conditional_aligned_realloc<Align>(reinterpret_cast<void*>(pts), sizeof(T)*new_size, sizeof(T)*old_size));
@@ -394,6 +412,7 @@ template<typename T, bool Align> inline T* conditional_aligned_realloc_new(T* pt
 
 template<typename T, bool Align> inline T* conditional_aligned_new_auto(size_t size)
 {
+  check_size_for_overflow<T>(size);
   T *result = reinterpret_cast<T*>(conditional_aligned_malloc<Align>(sizeof(T)*size));
   if(NumTraits<T>::RequireInitialization)
     construct_elements_of_array(result, size);
@@ -402,6 +421,8 @@ template<typename T, bool Align> inline T* conditional_aligned_new_auto(size_t s
 
 template<typename T, bool Align> inline T* conditional_aligned_realloc_new_auto(T* pts, size_t new_size, size_t old_size)
 {
+  check_size_for_overflow<T>(new_size);
+  check_size_for_overflow<T>(old_size);
   if(NumTraits<T>::RequireInitialization && (new_size < old_size))
     destruct_elements_of_array(pts+new_size, old_size-new_size);
   T *result = reinterpret_cast<T*>(conditional_aligned_realloc<Align>(reinterpret_cast<void*>(pts), sizeof(T)*new_size, sizeof(T)*old_size));
@@ -494,12 +515,12 @@ template<typename T> class aligned_stack_memory_handler
     aligned_stack_memory_handler(T* ptr, size_t size, bool dealloc)
       : m_ptr(ptr), m_size(size), m_deallocate(dealloc)
     {
-      if(NumTraits<T>::RequireInitialization)
+      if(NumTraits<T>::RequireInitialization && m_ptr)
         Eigen::internal::construct_elements_of_array(m_ptr, size);
     }
     ~aligned_stack_memory_handler()
     {
-      if(NumTraits<T>::RequireInitialization)
+      if(NumTraits<T>::RequireInitialization && m_ptr)
         Eigen::internal::destruct_elements_of_array<T>(m_ptr, m_size);
       if(m_deallocate)
         Eigen::internal::aligned_free(m_ptr);
@@ -536,6 +557,7 @@ template<typename T> class aligned_stack_memory_handler
   #endif
 
   #define ei_declare_aligned_stack_constructed_variable(TYPE,NAME,SIZE,BUFFER) \
+    Eigen::internal::check_size_for_overflow<TYPE>(SIZE); \
     TYPE* NAME = (BUFFER)!=0 ? (BUFFER) \
                : reinterpret_cast<TYPE*>( \
                       (sizeof(TYPE)*SIZE<=EIGEN_STACK_ALLOCATION_LIMIT) ? EIGEN_ALIGNED_ALLOCA(sizeof(TYPE)*SIZE) \
@@ -545,6 +567,7 @@ template<typename T> class aligned_stack_memory_handler
 #else
 
   #define ei_declare_aligned_stack_constructed_variable(TYPE,NAME,SIZE,BUFFER) \
+    Eigen::internal::check_size_for_overflow<TYPE>(SIZE); \
     TYPE* NAME = (BUFFER)!=0 ? BUFFER : reinterpret_cast<TYPE*>(Eigen::internal::aligned_malloc(sizeof(TYPE)*SIZE));    \
     Eigen::internal::aligned_stack_memory_handler<TYPE> EIGEN_CAT(NAME,_stack_memory_destructor)((BUFFER)==0 ? NAME : 0,SIZE,true)
     
@@ -663,12 +686,13 @@ public:
 
     size_type max_size() const throw()
     {
-        return std::numeric_limits<size_type>::max();
+        return (std::numeric_limits<size_type>::max)();
     }
 
-    pointer allocate( size_type num, const_pointer* hint = 0 )
+    pointer allocate( size_type num, const void* hint = 0 )
     {
-        static_cast<void>( hint ); // suppress unused variable warning
+        EIGEN_UNUSED_VARIABLE(hint);
+        internal::check_size_for_overflow<T>(num);
         return static_cast<pointer>( internal::aligned_malloc( num * sizeof(T) ) );
     }
 
@@ -903,7 +927,7 @@ inline int queryTopLevelCacheSize()
 {
   int l1, l2(-1), l3(-1);
   queryCacheSizes(l1,l2,l3);
-  return std::max(l2,l3);
+  return (std::max)(l2,l3);
 }
 
 } // end namespace internal

Eigen/src/Core/util/XprHelper.h

@@ -125,10 +125,9 @@ class compute_matrix_flags
       aligned_bit =
       (
             ((Options&DontAlign)==0)
-        &&  packet_traits<Scalar>::Vectorizable
         && (
 #if EIGEN_ALIGN_STATICALLY
-             ((!is_dynamic_size_storage) && (((MaxCols*MaxRows) % packet_traits<Scalar>::size) == 0))
+             ((!is_dynamic_size_storage) && (((MaxCols*MaxRows*int(sizeof(Scalar))) % 16) == 0))
 #else
              0
 #endif

Eigen/src/Eigen2Support/Cwise.h

@@ -82,13 +82,17 @@ template<typename ExpressionType> class Cwise
     const EIGEN_CWISE_BINOP_RETURN_TYPE(internal::scalar_quotient_op)
     operator/(const MatrixBase<OtherDerived> &other) const;
 
+    /** \deprecated ArrayBase::min() */
     template<typename OtherDerived>
     const EIGEN_CWISE_BINOP_RETURN_TYPE(internal::scalar_min_op)
-    min(const MatrixBase<OtherDerived> &other) const;
+    (min)(const MatrixBase<OtherDerived> &other) const
+    { return EIGEN_CWISE_BINOP_RETURN_TYPE(internal::scalar_min_op)(_expression(), other.derived()); }
 
+    /** \deprecated ArrayBase::max() */
     template<typename OtherDerived>
     const EIGEN_CWISE_BINOP_RETURN_TYPE(internal::scalar_max_op)
-    max(const MatrixBase<OtherDerived> &other) const;
+    (max)(const MatrixBase<OtherDerived> &other) const
+    { return EIGEN_CWISE_BINOP_RETURN_TYPE(internal::scalar_max_op)(_expression(), other.derived()); }
 
     const EIGEN_CWISE_UNOP_RETURN_TYPE(internal::scalar_abs_op)      abs() const;
     const EIGEN_CWISE_UNOP_RETURN_TYPE(internal::scalar_abs2_op)     abs2() const;

Eigen/src/Eigen2Support/CwiseOperators.h

@@ -96,24 +96,6 @@ inline ExpressionType& Cwise<ExpressionType>::operator/=(const MatrixBase<OtherD
   return m_matrix.const_cast_derived() = *this / other;
 }
 
-/** \deprecated ArrayBase::min() */
-template<typename ExpressionType>
-template<typename OtherDerived>
-EIGEN_STRONG_INLINE const EIGEN_CWISE_BINOP_RETURN_TYPE(internal::scalar_min_op)
-Cwise<ExpressionType>::min(const MatrixBase<OtherDerived> &other) const
-{
-  return EIGEN_CWISE_BINOP_RETURN_TYPE(internal::scalar_min_op)(_expression(), other.derived());
-}
-
-/** \deprecated ArrayBase::max() */
-template<typename ExpressionType>
-template<typename OtherDerived>
-EIGEN_STRONG_INLINE const EIGEN_CWISE_BINOP_RETURN_TYPE(internal::scalar_max_op)
-Cwise<ExpressionType>::max(const MatrixBase<OtherDerived> &other) const
-{
-  return EIGEN_CWISE_BINOP_RETURN_TYPE(internal::scalar_max_op)(_expression(), other.derived());
-}
-
 /***************************************************************************
 * The following functions were defined in Array
 ***************************************************************************/

Eigen/src/Eigen2Support/Geometry/AlignedBox.h

@@ -63,7 +63,7 @@ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(_Scalar,_AmbientDim==
   ~AlignedBox() {}
 
   /** \returns the dimension in which the box holds */
-  inline int dim() const { return AmbientDimAtCompileTime==Dynamic ? m_min.size()-1 : AmbientDimAtCompileTime; }
+  inline int dim() const { return AmbientDimAtCompileTime==Dynamic ? m_min.size()-1 : int(AmbientDimAtCompileTime); }
 
   /** \returns true if the box is null, i.e, empty. */
   inline bool isNull() const { return (m_min.cwise() > m_max).any(); }
@@ -71,18 +71,18 @@ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(_Scalar,_AmbientDim==
   /** Makes \c *this a null/empty box. */
   inline void setNull()
   {
-    m_min.setConstant( std::numeric_limits<Scalar>::max());
-    m_max.setConstant(-std::numeric_limits<Scalar>::max());
+    m_min.setConstant( (std::numeric_limits<Scalar>::max)());
+    m_max.setConstant(-(std::numeric_limits<Scalar>::max)());
   }
 
   /** \returns the minimal corner */
-  inline const VectorType& min() const { return m_min; }
+  inline const VectorType& (min)() const { return m_min; }
   /** \returns a non const reference to the minimal corner */
-  inline VectorType& min() { return m_min; }
+  inline VectorType& (min)() { return m_min; }
   /** \returns the maximal corner */
-  inline const VectorType& max() const { return m_max; }
+  inline const VectorType& (max)() const { return m_max; }
   /** \returns a non const reference to the maximal corner */
-  inline VectorType& max() { return m_max; }
+  inline VectorType& (max)() { return m_max; }
 
   /** \returns true if the point \a p is inside the box \c *this. */
   inline bool contains(const VectorType& p) const
@@ -90,19 +90,19 @@ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(_Scalar,_AmbientDim==
 
   /** \returns true if the box \a b is entirely inside the box \c *this. */
   inline bool contains(const AlignedBox& b) const
-  { return (m_min.cwise()<=b.min()).all() && (b.max().cwise()<=m_max).all(); }
+  { return (m_min.cwise()<=(b.min)()).all() && ((b.max)().cwise()<=m_max).all(); }
 
   /** Extends \c *this such that it contains the point \a p and returns a reference to \c *this. */
   inline AlignedBox& extend(const VectorType& p)
-  { m_min = m_min.cwise().min(p); m_max = m_max.cwise().max(p); return *this; }
+  { m_min = (m_min.cwise().min)(p); m_max = (m_max.cwise().max)(p); return *this; }
 
   /** Extends \c *this such that it contains the box \a b and returns a reference to \c *this. */
   inline AlignedBox& extend(const AlignedBox& b)
-  { m_min = m_min.cwise().min(b.m_min); m_max = m_max.cwise().max(b.m_max); return *this; }
+  { m_min = (m_min.cwise().min)(b.m_min); m_max = (m_max.cwise().max)(b.m_max); return *this; }
 
   /** Clamps \c *this by the box \a b and returns a reference to \c *this. */
   inline AlignedBox& clamp(const AlignedBox& b)
-  { m_min = m_min.cwise().max(b.m_min); m_max = m_max.cwise().min(b.m_max); return *this; }
+  { m_min = (m_min.cwise().max)(b.m_min); m_max = (m_max.cwise().min)(b.m_max); return *this; }
 
   /** Translate \c *this by the vector \a t and returns a reference to \c *this. */
   inline AlignedBox& translate(const VectorType& t)
@@ -138,8 +138,8 @@ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(_Scalar,_AmbientDim==
   template<typename OtherScalarType>
   inline explicit AlignedBox(const AlignedBox<OtherScalarType,AmbientDimAtCompileTime>& other)
   {
-    m_min = other.min().template cast<Scalar>();
-    m_max = other.max().template cast<Scalar>();
+    m_min = (other.min)().template cast<Scalar>();
+    m_max = (other.max)().template cast<Scalar>();
   }
 
   /** \returns \c true if \c *this is approximately equal to \a other, within the precision

Eigen/src/Eigen2Support/SVD.h

@@ -64,9 +64,9 @@ template<typename MatrixType> class SVD
     SVD() {} // a user who relied on compiler-generated default compiler reported problems with MSVC in 2.0.7
     
     SVD(const MatrixType& matrix)
-      : m_matU(matrix.rows(), std::min(matrix.rows(), matrix.cols())),
+      : m_matU(matrix.rows(), (std::min)(matrix.rows(), matrix.cols())),
         m_matV(matrix.cols(),matrix.cols()),
-        m_sigma(std::min(matrix.rows(),matrix.cols()))
+        m_sigma((std::min)(matrix.rows(),matrix.cols()))
     {
       compute(matrix);
     }
@@ -108,13 +108,13 @@ void SVD<MatrixType>::compute(const MatrixType& matrix)
 {
   const int m = matrix.rows();
   const int n = matrix.cols();
-  const int nu = std::min(m,n);
+  const int nu = (std::min)(m,n);
   ei_assert(m>=n && "In Eigen 2.0, SVD only works for MxN matrices with M>=N. Sorry!");
   ei_assert(m>1 && "In Eigen 2.0, SVD doesn't work on 1x1 matrices");
 
   m_matU.resize(m, nu);
   m_matU.setZero();
-  m_sigma.resize(std::min(m,n));
+  m_sigma.resize((std::min)(m,n));
   m_matV.resize(n,n);
 
   RowVector e(n);
@@ -126,9 +126,9 @@ void SVD<MatrixType>::compute(const MatrixType& matrix)
 
   // Reduce A to bidiagonal form, storing the diagonal elements
   // in s and the super-diagonal elements in e.
-  int nct = std::min(m-1,n);
-  int nrt = std::max(0,std::min(n-2,m));
-  for (k = 0; k < std::max(nct,nrt); ++k)
+  int nct = (std::min)(m-1,n);
+  int nrt = (std::max)(0,(std::min)(n-2,m));
+  for (k = 0; k < (std::max)(nct,nrt); ++k)
   {
     if (k < nct)
     {
@@ -193,7 +193,7 @@ void SVD<MatrixType>::compute(const MatrixType& matrix)
 
 
   // Set up the final bidiagonal matrix or order p.
-  int p = std::min(n,m+1);
+  int p = (std::min)(n,m+1);
   if (nct < n)
     m_sigma[nct] = matA(nct,nct);
   if (m < p)
@@ -380,7 +380,7 @@ void SVD<MatrixType>::compute(const MatrixType& matrix)
       case 3:
       {
         // Calculate the shift.
-        Scalar scale = std::max(std::max(std::max(std::max(
+        Scalar scale = (std::max)((std::max)((std::max)((std::max)(
                         ei_abs(m_sigma[p-1]),ei_abs(m_sigma[p-2])),ei_abs(e[p-2])),
                         ei_abs(m_sigma[k])),ei_abs(e[k]));
         Scalar sp = m_sigma[p-1]/scale;

Eigen/src/Eigenvalues/ComplexSchur.h

@@ -423,7 +423,7 @@ void ComplexSchur<MatrixType>::reduceToTriangularForm(bool computeU)
     JacobiRotation<ComplexScalar> rot;
     rot.makeGivens(m_matT.coeff(il,il) - shift, m_matT.coeff(il+1,il));
     m_matT.rightCols(m_matT.cols()-il).applyOnTheLeft(il, il+1, rot.adjoint());
-    m_matT.topRows(std::min(il+2,iu)+1).applyOnTheRight(il, il+1, rot);
+    m_matT.topRows((std::min)(il+2,iu)+1).applyOnTheRight(il, il+1, rot);
     if(computeU) m_matU.applyOnTheRight(il, il+1, rot);
 
     for(Index i=il+1 ; i<iu ; i++)
@@ -431,7 +431,7 @@ void ComplexSchur<MatrixType>::reduceToTriangularForm(bool computeU)
       rot.makeGivens(m_matT.coeffRef(i,i-1), m_matT.coeffRef(i+1,i-1), &m_matT.coeffRef(i,i-1));
       m_matT.coeffRef(i+1,i-1) = ComplexScalar(0);
       m_matT.rightCols(m_matT.cols()-i).applyOnTheLeft(i, i+1, rot.adjoint());
-      m_matT.topRows(std::min(i+2,iu)+1).applyOnTheRight(i, i+1, rot);
+      m_matT.topRows((std::min)(i+2,iu)+1).applyOnTheRight(i, i+1, rot);
       if(computeU) m_matU.applyOnTheRight(i, i+1, rot);
     }
   }

Eigen/src/Eigenvalues/EigenSolver.h

@@ -291,7 +291,7 @@ template<typename _MatrixType> class EigenSolver
 
     ComputationInfo info() const
     {
-      eigen_assert(m_isInitialized && "ComplexEigenSolver is not initialized.");
+      eigen_assert(m_isInitialized && "EigenSolver is not initialized.");
       return m_realSchur.info();
     }
 
@@ -339,7 +339,7 @@ typename EigenSolver<MatrixType>::EigenvectorsType EigenSolver<MatrixType>::eige
   EigenvectorsType matV(n,n);
   for (Index j=0; j<n; ++j)
   {
-    if (internal::isMuchSmallerThan(internal::imag(m_eivalues.coeff(j)), internal::real(m_eivalues.coeff(j))))
+    if (internal::isMuchSmallerThan(internal::imag(m_eivalues.coeff(j)), internal::real(m_eivalues.coeff(j))) || j+1==n)
     {
       // we have a real eigen value
       matV.col(j) = m_eivec.col(j).template cast<ComplexScalar>();
@@ -435,7 +435,7 @@ void EigenSolver<MatrixType>::doComputeEigenvectors()
   Scalar norm = 0.0;
   for (Index j = 0; j < size; ++j)
   {
-    norm += m_matT.row(j).segment(std::max(j-1,Index(0)), size-std::max(j-1,Index(0))).cwiseAbs().sum();
+    norm += m_matT.row(j).segment((std::max)(j-1,Index(0)), size-(std::max)(j-1,Index(0))).cwiseAbs().sum();
   }
   
   // Backsubstitute to find vectors of upper triangular form
@@ -564,16 +564,19 @@ void EigenSolver<MatrixType>::doComputeEigenvectors()
 
           // Overflow control
           using std::max;
-          Scalar t = max(internal::abs(m_matT.coeff(i,n-1)),internal::abs(m_matT.coeff(i,n)));
+          Scalar t = (max)(internal::abs(m_matT.coeff(i,n-1)),internal::abs(m_matT.coeff(i,n)));
           if ((eps * t) * t > Scalar(1))
             m_matT.block(i, n-1, size-i, 2) /= t;
 
         }
       }
+      
+      // We handled a pair of complex conjugate eigenvalues, so need to skip them both
+      n--;
     }
     else
     {
-      eigen_assert("Internal bug in EigenSolver"); // this should not happen
+      eigen_assert(0 && "Internal bug in EigenSolver"); // this should not happen
     }
   }
 

Eigen/src/Eigenvalues/RealSchur.h

@@ -238,38 +238,41 @@ RealSchur<MatrixType>& RealSchur<MatrixType>::compute(const MatrixType& matrix,
   Scalar exshift = 0.0; // sum of exceptional shifts
   Scalar norm = computeNormOfT();
 
-  while (iu >= 0)
+  if(norm!=0)
   {
-    Index il = findSmallSubdiagEntry(iu, norm);
-
-    // Check for convergence
-    if (il == iu) // One root found
-    {
-      m_matT.coeffRef(iu,iu) = m_matT.coeff(iu,iu) + exshift;
-      if (iu > 0) 
-        m_matT.coeffRef(iu, iu-1) = Scalar(0);
-      iu--;
-      iter = 0;
-    }
-    else if (il == iu-1) // Two roots found
-    {
-      splitOffTwoRows(iu, computeU, exshift);
-      iu -= 2;
-      iter = 0;
-    }
-    else // No convergence yet
-    {
-      // The firstHouseholderVector vector has to be initialized to something to get rid of a silly GCC warning (-O1 -Wall -DNDEBUG )
-      Vector3s firstHouseholderVector(0,0,0), shiftInfo;
-      computeShift(iu, iter, exshift, shiftInfo);
-      iter = iter + 1; 
-      if (iter > m_maxIterations) break;
-      Index im;
-      initFrancisQRStep(il, iu, shiftInfo, im, firstHouseholderVector);
-      performFrancisQRStep(il, im, iu, computeU, firstHouseholderVector, workspace);
-    }
-  } 
+    while (iu >= 0)
+    {
+      Index il = findSmallSubdiagEntry(iu, norm);
 
+      // Check for convergence
+      if (il == iu) // One root found
+      {
+        m_matT.coeffRef(iu,iu) = m_matT.coeff(iu,iu) + exshift;
+        if (iu > 0) 
+          m_matT.coeffRef(iu, iu-1) = Scalar(0);
+        iu--;
+        iter = 0;
+      }
+      else if (il == iu-1) // Two roots found
+      {
+        splitOffTwoRows(iu, computeU, exshift);
+        iu -= 2;
+        iter = 0;
+      }
+      else // No convergence yet
+      {
+        // The firstHouseholderVector vector has to be initialized to something to get rid of a silly GCC warning (-O1 -Wall -DNDEBUG )
+        Vector3s firstHouseholderVector(0,0,0), shiftInfo;
+        computeShift(iu, iter, exshift, shiftInfo);
+        iter = iter + 1; 
+        if (iter > m_maxIterations) break;
+        Index im;
+        initFrancisQRStep(il, iu, shiftInfo, im, firstHouseholderVector);
+        performFrancisQRStep(il, im, iu, computeU, firstHouseholderVector, workspace);
+      }
+    } 
+  }
+  
   if(iter <= m_maxIterations) 
     m_info = Success;
   else
@@ -290,7 +293,7 @@ inline typename MatrixType::Scalar RealSchur<MatrixType>::computeNormOfT()
   //               + m_matT.bottomLeftCorner(size-1,size-1).diagonal().cwiseAbs().sum();
   Scalar norm = 0.0;
   for (Index j = 0; j < size; ++j)
-    norm += m_matT.row(j).segment(std::max(j-1,Index(0)), size-std::max(j-1,Index(0))).cwiseAbs().sum();
+    norm += m_matT.row(j).segment((std::max)(j-1,Index(0)), size-(std::max)(j-1,Index(0))).cwiseAbs().sum();
   return norm;
 }
 
@@ -442,7 +445,7 @@ inline void RealSchur<MatrixType>::performFrancisQRStep(Index il, Index im, Inde
 
       // These Householder transformations form the O(n^3) part of the algorithm
       m_matT.block(k, k, 3, size-k).applyHouseholderOnTheLeft(ess, tau, workspace);
-      m_matT.block(0, k, std::min(iu,k+3) + 1, 3).applyHouseholderOnTheRight(ess, tau, workspace);
+      m_matT.block(0, k, (std::min)(iu,k+3) + 1, 3).applyHouseholderOnTheRight(ess, tau, workspace);
       if (computeU)
         m_matU.block(0, k, size, 3).applyHouseholderOnTheRight(ess, tau, workspace);
     }

Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h

@@ -307,7 +307,8 @@ template<typename _MatrixType> class SelfAdjointEigenSolver
 
     /** \brief Maximum number of iterations.
       *
-      * Maximum number of iterations allowed for an eigenvalue to converge.
+      * The algorithm terminates if it does not converge within m_maxIterations * n iterations, where n
+      * denotes the size of the matrix. This value is currently set to 30 (copied from LAPACK).
       */
     static const int m_maxIterations = 30;
 
@@ -387,7 +388,7 @@ SelfAdjointEigenSolver<MatrixType>& SelfAdjointEigenSolver<MatrixType>
   {
     m_eivalues.coeffRef(0,0) = internal::real(matrix.coeff(0,0));
     if(computeEigenvectors)
-      m_eivec.setOnes();
+      m_eivec.setOnes(n,n);
     m_info = Success;
     m_isInitialized = true;
     m_eigenvectorsOk = computeEigenvectors;
@@ -407,7 +408,7 @@ SelfAdjointEigenSolver<MatrixType>& SelfAdjointEigenSolver<MatrixType>
   
   Index end = n-1;
   Index start = 0;
-  Index iter = 0; // number of iterations we are working on one element
+  Index iter = 0; // total number of iterations
 
   while (end>0)
   {
@@ -418,15 +419,14 @@ SelfAdjointEigenSolver<MatrixType>& SelfAdjointEigenSolver<MatrixType>
     // find the largest unreduced block
     while (end>0 && m_subdiag[end-1]==0)
     {
-      iter = 0;
       end--;
     }
     if (end<=0)
       break;
 
-    // if we spent too many iterations on the current element, we give up
+    // if we spent too many iterations, we give up
     iter++;
-    if(iter > m_maxIterations) break;
+    if(iter > m_maxIterations * n) break;
 
     start = end - 1;
     while (start>0 && m_subdiag[start-1]!=0)
@@ -435,7 +435,7 @@ SelfAdjointEigenSolver<MatrixType>& SelfAdjointEigenSolver<MatrixType>
     internal::tridiagonal_qr_step<MatrixType::Flags&RowMajorBit ? RowMajor : ColMajor>(diag.data(), m_subdiag.data(), start, end, computeEigenvectors ? m_eivec.data() : (Scalar*)0, n);
   }
 
-  if (iter <= m_maxIterations)
+  if (iter <= m_maxIterations * n)
     m_info = Success;
   else
     m_info = NoConvergence;

Eigen/src/Geometry/AlignedBox.h

@@ -111,13 +111,13 @@ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(_Scalar,_AmbientDim)
   }
 
   /** \returns the minimal corner */
-  inline const VectorType& min() const { return m_min; }
+  inline const VectorType& (min)() const { return m_min; }
   /** \returns a non const reference to the minimal corner */
-  inline VectorType& min() { return m_min; }
+  inline VectorType& (min)() { return m_min; }
   /** \returns the maximal corner */
-  inline const VectorType& max() const { return m_max; }
+  inline const VectorType& (max)() const { return m_max; }
   /** \returns a non const reference to the maximal corner */
-  inline VectorType& max() { return m_max; }
+  inline VectorType& (max)() { return m_max; }
 
   /** \returns the center of the box */
   inline const CwiseUnaryOp<internal::scalar_quotient1_op<Scalar>,
@@ -196,7 +196,7 @@ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(_Scalar,_AmbientDim)
 
   /** \returns true if the box \a b is entirely inside the box \c *this. */
   inline bool contains(const AlignedBox& b) const
-  { return (m_min.array()<=b.min().array()).all() && (b.max().array()<=m_max.array()).all(); }
+  { return (m_min.array()<=(b.min)().array()).all() && ((b.max)().array()<=m_max.array()).all(); }
 
   /** Extends \c *this such that it contains the point \a p and returns a reference to \c *this. */
   template<typename Derived>
@@ -287,8 +287,8 @@ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(_Scalar,_AmbientDim)
   template<typename OtherScalarType>
   inline explicit AlignedBox(const AlignedBox<OtherScalarType,AmbientDimAtCompileTime>& other)
   {
-    m_min = other.min().template cast<Scalar>();
-    m_max = other.max().template cast<Scalar>();
+    m_min = (other.min)().template cast<Scalar>();
+    m_max = (other.max)().template cast<Scalar>();
   }
 
   /** \returns \c true if \c *this is approximately equal to \a other, within the precision

Eigen/src/Geometry/AngleAxis.h

@@ -182,7 +182,7 @@ AngleAxis<Scalar>& AngleAxis<Scalar>::operator=(const QuaternionBase<QuatDerived
   }
   else
   {
-    m_angle = Scalar(2)*acos(min(max(Scalar(-1),q.w()),Scalar(1)));
+    m_angle = Scalar(2)*acos((min)((max)(Scalar(-1),q.w()),Scalar(1)));
     m_axis = q.vec() / internal::sqrt(n2);
   }
   return *this;

Eigen/src/Geometry/Hyperplane.h

@@ -189,7 +189,7 @@ public:
     *
     * \note If \a other is approximately parallel to *this, this method will return any point on *this.
     */
-  VectorType intersection(const Hyperplane& other)
+  VectorType intersection(const Hyperplane& other) const
   {
     EIGEN_STATIC_ASSERT_VECTOR_SPECIFIC_SIZE(VectorType, 2)
     Scalar det = coeffs().coeff(0) * other.coeffs().coeff(1) - coeffs().coeff(1) * other.coeffs().coeff(0);
@@ -225,7 +225,7 @@ public:
       normal() = mat * normal();
     else
     {
-      eigen_assert("invalid traits value in Hyperplane::transform()");
+      eigen_assert(0 && "invalid traits value in Hyperplane::transform()");
     }
     return *this;
   }

Eigen/src/Geometry/ParametrizedLine.h

@@ -34,7 +34,7 @@
   *
   * A parametrized line is defined by an origin point \f$ \mathbf{o} \f$ and a unit
   * direction vector \f$ \mathbf{d} \f$ such that the line corresponds to
-  * the set \f$ l(t) = \mathbf{o} + t \mathbf{d} \f$, \f$ l \in \mathbf{R} \f$.
+  * the set \f$ l(t) = \mathbf{o} + t \mathbf{d} \f$, \f$ t \in \mathbf{R} \f$.
   *
   * \param _Scalar the scalar type, i.e., the type of the coefficients
   * \param _AmbientDim the dimension of the ambient space, can be a compile time value or Dynamic.
@@ -107,7 +107,7 @@ public:
   { return origin() + direction().dot(p-origin()) * direction(); }
 
   template <int OtherOptions>
-  Scalar intersection(const Hyperplane<_Scalar, _AmbientDim, OtherOptions>& hyperplane);
+  Scalar intersection(const Hyperplane<_Scalar, _AmbientDim, OtherOptions>& hyperplane) const;
 
   /** \returns \c *this with scalar type casted to \a NewScalarType
     *
@@ -159,7 +159,7 @@ inline ParametrizedLine<_Scalar, _AmbientDim,_Options>::ParametrizedLine(const H
   */
 template <typename _Scalar, int _AmbientDim, int _Options>
 template <int OtherOptions>
-inline _Scalar ParametrizedLine<_Scalar, _AmbientDim,_Options>::intersection(const Hyperplane<_Scalar, _AmbientDim, OtherOptions>& hyperplane)
+inline _Scalar ParametrizedLine<_Scalar, _AmbientDim,_Options>::intersection(const Hyperplane<_Scalar, _AmbientDim, OtherOptions>& hyperplane) const
 {
   return -(hyperplane.offset()+hyperplane.normal().dot(origin()))
           / hyperplane.normal().dot(direction());

Eigen/src/Geometry/Quaternion.h

@@ -182,10 +182,9 @@ public:
   template<typename NewScalarType>
   inline typename internal::cast_return_type<Derived,Quaternion<NewScalarType> >::type cast() const
   {
-    return typename internal::cast_return_type<Derived,Quaternion<NewScalarType> >::type(
-      coeffs().template cast<NewScalarType>());
+    return typename internal::cast_return_type<Derived,Quaternion<NewScalarType> >::type(derived());
   }
-  
+
 #ifdef EIGEN_QUATERNIONBASE_PLUGIN
 # include EIGEN_QUATERNIONBASE_PLUGIN
 #endif
@@ -201,7 +200,8 @@ public:
   *
   * \brief The quaternion class used to represent 3D orientations and rotations
   *
-  * \param _Scalar the scalar type, i.e., the type of the coefficients
+  * \tparam _Scalar the scalar type, i.e., the type of the coefficients
+  * \tparam _Options controls the memory alignement of the coeffecients. Can be \# AutoAlign or \# DontAlign. Default is AutoAlign.
   *
   * This class represents a quaternion \f$ w+xi+yj+zk \f$ that is a convenient representation of
   * orientations and rotations of objects in three dimensions. Compared to other representations
@@ -225,22 +225,25 @@ struct traits<Quaternion<_Scalar,_Options> >
   typedef _Scalar Scalar;
   typedef Matrix<_Scalar,4,1,_Options> Coefficients;
   enum{
-    IsAligned = bool(EIGEN_ALIGN) && ((int(_Options)&Aligned)==Aligned),
+    IsAligned = internal::traits<Coefficients>::Flags & AlignedBit,
     Flags = IsAligned ? (AlignedBit | LvalueBit) : LvalueBit
   };
 };
 }
 
 template<typename _Scalar, int _Options>
-class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >{
+class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
+{
   typedef QuaternionBase<Quaternion<_Scalar,_Options> > Base;
+  enum { IsAligned = internal::traits<Quaternion>::IsAligned };
+
 public:
   typedef _Scalar Scalar;
 
   EIGEN_INHERIT_ASSIGNMENT_EQUAL_OPERATOR(Quaternion)
   using Base::operator*=;
 
-  typedef typename internal::traits<Quaternion<Scalar,_Options> >::Coefficients Coefficients;
+  typedef typename internal::traits<Quaternion>::Coefficients Coefficients;
   typedef typename Base::AngleAxisType AngleAxisType;
 
   /** Default constructor leaving the quaternion uninitialized. */
@@ -271,9 +274,16 @@ public:
   template<typename Derived>
   explicit inline Quaternion(const MatrixBase<Derived>& other) { *this = other; }
 
+  /** Explicit copy constructor with scalar conversion */
+  template<typename OtherScalar, int OtherOptions>
+  explicit inline Quaternion(const Quaternion<OtherScalar, OtherOptions>& other)
+  { m_coeffs = other.coeffs().template cast<Scalar>(); }
+
   inline Coefficients& coeffs() { return m_coeffs;}
   inline const Coefficients& coeffs() const { return m_coeffs;}
 
+  EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF(IsAligned)
+
 protected:
   Coefficients m_coeffs;
   
@@ -299,41 +309,29 @@ typedef Quaternion<double> Quaterniond;
 
 namespace internal {
   template<typename _Scalar, int _Options>
-  struct traits<Map<Quaternion<_Scalar>, _Options> >:
-  traits<Quaternion<_Scalar, _Options> >
+  struct traits<Map<Quaternion<_Scalar>, _Options> > : traits<Quaternion<_Scalar, (int(_Options)&Aligned)==Aligned ? AutoAlign : DontAlign> >
   {
-    typedef _Scalar Scalar;
     typedef Map<Matrix<_Scalar,4,1>, _Options> Coefficients;
-
-    typedef traits<Quaternion<_Scalar, _Options> > TraitsBase;
-    enum {
-      IsAligned = TraitsBase::IsAligned,
-
-      Flags = TraitsBase::Flags
-    };
   };
 }
 
 namespace internal {
   template<typename _Scalar, int _Options>
-  struct traits<Map<const Quaternion<_Scalar>, _Options> >:
-  traits<Quaternion<_Scalar> >
+  struct traits<Map<const Quaternion<_Scalar>, _Options> > : traits<Quaternion<_Scalar, (int(_Options)&Aligned)==Aligned ? AutoAlign : DontAlign> >
   {
-    typedef _Scalar Scalar;
     typedef Map<const Matrix<_Scalar,4,1>, _Options> Coefficients;
-
-    typedef traits<Quaternion<_Scalar, _Options> > TraitsBase;
+    typedef traits<Quaternion<_Scalar, (int(_Options)&Aligned)==Aligned ? AutoAlign : DontAlign> > TraitsBase;
     enum {
-      IsAligned = TraitsBase::IsAligned,
       Flags = TraitsBase::Flags & ~LvalueBit
     };
   };
 }
 
-/** \brief Quaternion expression mapping a constant memory buffer
+/** \ingroup Geometry_Module
+  * \brief Quaternion expression mapping a constant memory buffer
   *
-  * \param _Scalar the type of the Quaternion coefficients
-  * \param _Options see class Map
+  * \tparam _Scalar the type of the Quaternion coefficients
+  * \tparam _Options see class Map
   *
   * This is a specialization of class Map for Quaternion. This class allows to view
   * a 4 scalar memory buffer as an Eigen's Quaternion object.
@@ -366,10 +364,11 @@ class Map<const Quaternion<_Scalar>, _Options >
     const Coefficients m_coeffs;
 };
 
-/** \brief Expression of a quaternion from a memory buffer
+/** \ingroup Geometry_Module
+  * \brief Expression of a quaternion from a memory buffer
   *
-  * \param _Scalar the type of the Quaternion coefficients
-  * \param _Options see class Map
+  * \tparam _Scalar the type of the Quaternion coefficients
+  * \tparam _Options see class Map
   *
   * This is a specialization of class Map for Quaternion. This class allows to view
   * a 4 scalar memory buffer as an Eigen's  Quaternion object.
@@ -673,7 +672,7 @@ QuaternionBase<Derived>::slerp(Scalar t, const QuaternionBase<OtherDerived>& oth
   Scalar scale0;
   Scalar scale1;
 
-  if (absD>=one)
+  if(absD>=one)
   {
     scale0 = Scalar(1) - t;
     scale1 = t;
@@ -686,9 +685,8 @@ QuaternionBase<Derived>::slerp(Scalar t, const QuaternionBase<OtherDerived>& oth
 
     scale0 = internal::sin( ( Scalar(1) - t ) * theta) / sinTheta;
     scale1 = internal::sin( ( t * theta) ) / sinTheta;
-    if (d<0)
-      scale1 = -scale1;
   }
+  if(d<0) scale1 = -scale1;
 
   return Quaternion<Scalar>(scale0 * coeffs() + scale1 * other.coeffs());
 }

Eigen/src/Geometry/Rotation2D.h

@@ -89,7 +89,7 @@ public:
 
   /** Concatenates two rotations */
   inline Rotation2D& operator*=(const Rotation2D& other)
-  { return m_angle += other.m_angle; return *this; }
+  { m_angle += other.m_angle; return *this; }
 
   /** Applies the rotation to a 2D vector */
   Vector2 operator* (const Vector2& vec) const

Eigen/src/Geometry/Transform.h

@@ -37,7 +37,7 @@ struct transform_traits
     Dim = Transform::Dim,
     HDim = Transform::HDim,
     Mode = Transform::Mode,
-    IsProjective = (Mode==Projective)
+    IsProjective = (int(Mode)==int(Projective))
   };
 };
 
@@ -61,7 +61,7 @@ template< typename Lhs,
           typename Rhs,
           bool AnyProjective = 
             transform_traits<Lhs>::IsProjective ||
-            transform_traits<Lhs>::IsProjective>
+            transform_traits<Rhs>::IsProjective>
 struct transform_transform_product_impl;
 
 template< typename Other,
@@ -571,7 +571,7 @@ public:
     if(int(Mode)!=int(AffineCompact))
     {
       matrix().template block<1,Dim>(Dim,0).setZero();
-      matrix().coeffRef(Dim,Dim) = 1;
+      matrix().coeffRef(Dim,Dim) = Scalar(1);
     }
   }
 
@@ -1391,6 +1391,35 @@ struct transform_transform_product_impl<Transform<Scalar,Dim,LhsMode,LhsOptions>
   }
 };
 
+template<typename Scalar, int Dim, int LhsOptions, int RhsOptions>
+struct transform_transform_product_impl<Transform<Scalar,Dim,AffineCompact,LhsOptions>,Transform<Scalar,Dim,Projective,RhsOptions>,true >
+{
+  typedef Transform<Scalar,Dim,AffineCompact,LhsOptions> Lhs;
+  typedef Transform<Scalar,Dim,Projective,RhsOptions> Rhs;
+  typedef Transform<Scalar,Dim,Projective> ResultType;
+  static ResultType run(const Lhs& lhs, const Rhs& rhs)
+  {
+    ResultType res;
+    res.matrix().template topRows<Dim>() = lhs.matrix() * rhs.matrix();
+    res.matrix().row(Dim) = rhs.matrix().row(Dim);
+    return res;
+  }
+};
+
+template<typename Scalar, int Dim, int LhsOptions, int RhsOptions>
+struct transform_transform_product_impl<Transform<Scalar,Dim,Projective,LhsOptions>,Transform<Scalar,Dim,AffineCompact,RhsOptions>,true >
+{
+  typedef Transform<Scalar,Dim,Projective,LhsOptions> Lhs;
+  typedef Transform<Scalar,Dim,AffineCompact,RhsOptions> Rhs;
+  typedef Transform<Scalar,Dim,Projective> ResultType;
+  static ResultType run(const Lhs& lhs, const Rhs& rhs)
+  {
+    ResultType res(lhs.matrix().template leftCols<Dim>() * rhs.matrix());
+    res.matrix().col(Dim) += lhs.matrix().col(Dim);
+    return res;
+  }
+};
+
 } // end namespace internal
 
 #endif // EIGEN_TRANSFORM_H

Eigen/src/Geometry/arch/Geometry_SSE.h

@@ -96,7 +96,7 @@ struct quat_product<Architecture::SSE, Derived, OtherDerived, double, Aligned>
    */
   t1 = padd(pmul(a_ww, b_xy), pmul(a_yy, b_zw));
   t2 = psub(pmul(a_zz, b_xy), pmul(a_xx, b_zw));
-#ifdef __SSE3__
+#ifdef EIGEN_VECTORIZE_SSE3
   EIGEN_UNUSED_VARIABLE(mask)
   pstore(&res.x(), _mm_addsub_pd(t1, preverse(t2)));
 #else
@@ -110,7 +110,7 @@ struct quat_product<Architecture::SSE, Derived, OtherDerived, double, Aligned>
    */
   t1 = psub(pmul(a_ww, b_zw), pmul(a_yy, b_xy));
   t2 = padd(pmul(a_zz, b_zw), pmul(a_xx, b_xy));
-#ifdef __SSE3__
+#ifdef EIGEN_VECTORIZE_SSE3
   EIGEN_UNUSED_VARIABLE(mask)
   pstore(&res.z(), preverse(_mm_addsub_pd(preverse(t1), t2)));
 #else

Eigen/src/LU/FullPivLU.h

@@ -443,7 +443,6 @@ FullPivLU<MatrixType>& FullPivLU<MatrixType>::compute(const MatrixType& matrix)
 
   m_nonzero_pivots = size; // the generic case is that in which all pivots are nonzero (invertible case)
   m_maxpivot = RealScalar(0);
-  RealScalar cutoff(0);
 
   for(Index k = 0; k < size; ++k)
   {
@@ -458,14 +457,7 @@ FullPivLU<MatrixType>& FullPivLU<MatrixType>::compute(const MatrixType& matrix)
     row_of_biggest_in_corner += k; // correct the values! since they were computed in the corner,
     col_of_biggest_in_corner += k; // need to add k to them.
 
-    // when k==0, biggest_in_corner is the biggest coeff absolute value in the original matrix
-    if(k == 0) cutoff = biggest_in_corner * NumTraits<Scalar>::epsilon();
-
-    // if the pivot (hence the corner) is "zero", terminate to avoid generating nan/inf values.
-    // Notice that using an exact comparison (biggest_in_corner==0) here, as Golub-van Loan do in
-    // their pseudo-code, results in numerical instability! The cutoff here has been validated
-    // by running the unit test 'lu' with many repetitions.
-    if(biggest_in_corner < cutoff)
+    if(biggest_in_corner==RealScalar(0))
     {
       // before exiting, make sure to initialize the still uninitialized transpositions
       // in a sane state without destroying what we already have.
@@ -533,7 +525,7 @@ template<typename MatrixType>
 MatrixType FullPivLU<MatrixType>::reconstructedMatrix() const
 {
   eigen_assert(m_isInitialized && "LU is not initialized.");
-  const Index smalldim = std::min(m_lu.rows(), m_lu.cols());
+  const Index smalldim = (std::min)(m_lu.rows(), m_lu.cols());
   // LU
   MatrixType res(m_lu.rows(),m_lu.cols());
   // FIXME the .toDenseMatrix() should not be needed...
@@ -695,7 +687,7 @@ struct solve_retval<FullPivLU<_MatrixType>, Rhs>
     const Index rows = dec().rows(), cols = dec().cols(),
               nonzero_pivots = dec().nonzeroPivots();
     eigen_assert(rhs().rows() == rows);
-    const Index smalldim = std::min(rows, cols);
+    const Index smalldim = (std::min)(rows, cols);
 
     if(nonzero_pivots == 0)
     {

Eigen/src/LU/PartialPivLU.h

@@ -253,7 +253,7 @@ struct partial_lu_impl
   {
     const Index rows = lu.rows();
     const Index cols = lu.cols();
-    const Index size = std::min(rows,cols);
+    const Index size = (std::min)(rows,cols);
     nb_transpositions = 0;
     int first_zero_pivot = -1;
     for(Index k = 0; k < size; ++k)
@@ -313,7 +313,7 @@ struct partial_lu_impl
     MapLU lu1(lu_data,StorageOrder==RowMajor?rows:luStride,StorageOrder==RowMajor?luStride:cols);
     MatrixType lu(lu1,0,0,rows,cols);
 
-    const Index size = std::min(rows,cols);
+    const Index size = (std::min)(rows,cols);
 
     // if the matrix is too small, no blocking:
     if(size<=16)
@@ -327,14 +327,14 @@ struct partial_lu_impl
     {
       blockSize = size/8;
       blockSize = (blockSize/16)*16;
-      blockSize = std::min(std::max(blockSize,Index(8)), maxBlockSize);
+      blockSize = (std::min)((std::max)(blockSize,Index(8)), maxBlockSize);
     }
 
     nb_transpositions = 0;
     int first_zero_pivot = -1;
     for(Index k = 0; k < size; k+=blockSize)
     {
-      Index bs = std::min(size-k,blockSize); // actual size of the block
+      Index bs = (std::min)(size-k,blockSize); // actual size of the block
       Index trows = rows - k - bs; // trailing rows
       Index tsize = size - k - bs; // trailing size
 

Eigen/src/LU/arch/Inverse_SSE.h

@@ -55,7 +55,7 @@ struct compute_inverse_size4<Architecture::SSE, float, MatrixType, ResultType>
   
   static void run(const MatrixType& matrix, ResultType& result)
   {
-    EIGEN_ALIGN16 const  int _Sign_PNNP[4] = { 0x00000000, 0x80000000, 0x80000000, 0x00000000 };
+    EIGEN_ALIGN16 const unsigned int _Sign_PNNP[4] = { 0x00000000, 0x80000000, 0x80000000, 0x00000000 };
 
     // Load the full matrix into registers
     __m128 _L1 = matrix.template packet<MatrixAlignment>( 0);
@@ -182,8 +182,8 @@ struct compute_inverse_size4<Architecture::SSE, double, MatrixType, ResultType>
   };
   static void run(const MatrixType& matrix, ResultType& result)
   {
-    const EIGEN_ALIGN16 long long int _Sign_NP[2] = { 0x8000000000000000ll, 0x0000000000000000ll };
-    const EIGEN_ALIGN16 long long int _Sign_PN[2] = { 0x0000000000000000ll, 0x8000000000000000ll };
+    const __m128d _Sign_NP = _mm_castsi128_pd(_mm_set_epi32(0x0,0x0,0x80000000,0x0));
+    const __m128d _Sign_PN = _mm_castsi128_pd(_mm_set_epi32(0x80000000,0x0,0x0,0x0));
 
     // The inverse is calculated using "Divide and Conquer" technique. The
     // original matrix is divide into four 2x2 sub-matrices. Since each
@@ -316,8 +316,8 @@ struct compute_inverse_size4<Architecture::SSE, double, MatrixType, ResultType>
     iB1 = _mm_sub_pd(_mm_mul_pd(C1, dB), iB1);
     iB2 = _mm_sub_pd(_mm_mul_pd(C2, dB), iB2);
 
-    d1 = _mm_xor_pd(rd, _mm_load_pd((double*)_Sign_PN));
-    d2 = _mm_xor_pd(rd, _mm_load_pd((double*)_Sign_NP));
+    d1 = _mm_xor_pd(rd, _Sign_PN);
+    d2 = _mm_xor_pd(rd, _Sign_NP);
 
     //  iC = B*|C| - A*C#*D;
     dC = _mm_shuffle_pd(dC,dC,0);

Eigen/src/QR/ColPivHouseholderQR.h

@@ -93,7 +93,7 @@ template<typename _MatrixType> class ColPivHouseholderQR
       */
     ColPivHouseholderQR(Index rows, Index cols)
       : m_qr(rows, cols),
-        m_hCoeffs(std::min(rows,cols)),
+        m_hCoeffs((std::min)(rows,cols)),
         m_colsPermutation(cols),
         m_colsTranspositions(cols),
         m_temp(cols),
@@ -103,7 +103,7 @@ template<typename _MatrixType> class ColPivHouseholderQR
 
     ColPivHouseholderQR(const MatrixType& matrix)
       : m_qr(matrix.rows(), matrix.cols()),
-        m_hCoeffs(std::min(matrix.rows(),matrix.cols())),
+        m_hCoeffs((std::min)(matrix.rows(),matrix.cols())),
         m_colsPermutation(matrix.cols()),
         m_colsTranspositions(matrix.cols()),
         m_temp(matrix.cols()),

Eigen/src/QR/FullPivHouseholderQR.h

@@ -93,21 +93,21 @@ template<typename _MatrixType> class FullPivHouseholderQR
       */
     FullPivHouseholderQR(Index rows, Index cols)
       : m_qr(rows, cols),
-        m_hCoeffs(std::min(rows,cols)),
+        m_hCoeffs((std::min)(rows,cols)),
         m_rows_transpositions(rows),
         m_cols_transpositions(cols),
         m_cols_permutation(cols),
-        m_temp(std::min(rows,cols)),
+        m_temp((std::min)(rows,cols)),
         m_isInitialized(false),
         m_usePrescribedThreshold(false) {}
 
     FullPivHouseholderQR(const MatrixType& matrix)
       : m_qr(matrix.rows(), matrix.cols()),
-        m_hCoeffs(std::min(matrix.rows(), matrix.cols())),
+        m_hCoeffs((std::min)(matrix.rows(), matrix.cols())),
         m_rows_transpositions(matrix.rows()),
         m_cols_transpositions(matrix.cols()),
         m_cols_permutation(matrix.cols()),
-        m_temp(std::min(matrix.rows(), matrix.cols())),
+        m_temp((std::min)(matrix.rows(), matrix.cols())),
         m_isInitialized(false),
         m_usePrescribedThreshold(false)
     {
@@ -379,7 +379,7 @@ FullPivHouseholderQR<MatrixType>& FullPivHouseholderQR<MatrixType>::compute(cons
 {
   Index rows = matrix.rows();
   Index cols = matrix.cols();
-  Index size = std::min(rows,cols);
+  Index size = (std::min)(rows,cols);
 
   m_qr = matrix;
   m_hCoeffs.resize(size);
@@ -493,7 +493,7 @@ struct solve_retval<FullPivHouseholderQR<_MatrixType>, Rhs>
       RealScalar biggest_in_upper_part_of_c = c.topRows(   dec().rank()     ).cwiseAbs().maxCoeff();
       RealScalar biggest_in_lower_part_of_c = c.bottomRows(rows-dec().rank()).cwiseAbs().maxCoeff();
       // FIXME brain dead
-      const RealScalar m_precision = NumTraits<Scalar>::epsilon() * std::min(rows,cols);
+      const RealScalar m_precision = NumTraits<Scalar>::epsilon() * (std::min)(rows,cols);
       // this internal:: prefix is needed by at least gcc 3.4 and ICC
       if(!internal::isMuchSmallerThan(biggest_in_lower_part_of_c, biggest_in_upper_part_of_c, m_precision))
         return;
@@ -520,7 +520,7 @@ typename FullPivHouseholderQR<MatrixType>::MatrixQType FullPivHouseholderQR<Matr
   // and v_k is the k-th Householder vector [1,m_qr(k+1,k), m_qr(k+2,k), ...]
   Index rows = m_qr.rows();
   Index cols = m_qr.cols();
-  Index size = std::min(rows,cols);
+  Index size = (std::min)(rows,cols);
   MatrixQType res = MatrixQType::Identity(rows, rows);
   Matrix<Scalar,1,MatrixType::RowsAtCompileTime> temp(rows);
   for (Index k = size-1; k >= 0; k--)

Eigen/src/QR/HouseholderQR.h

@@ -88,13 +88,13 @@ template<typename _MatrixType> class HouseholderQR
       */
     HouseholderQR(Index rows, Index cols)
       : m_qr(rows, cols),
-        m_hCoeffs(std::min(rows,cols)),
+        m_hCoeffs((std::min)(rows,cols)),
         m_temp(cols),
         m_isInitialized(false) {}
 
     HouseholderQR(const MatrixType& matrix)
       : m_qr(matrix.rows(), matrix.cols()),
-        m_hCoeffs(std::min(matrix.rows(),matrix.cols())),
+        m_hCoeffs((std::min)(matrix.rows(),matrix.cols())),
         m_temp(matrix.cols()),
         m_isInitialized(false)
     {
@@ -210,7 +210,7 @@ void householder_qr_inplace_unblocked(MatrixQR& mat, HCoeffs& hCoeffs, typename
   typedef typename MatrixQR::RealScalar RealScalar;
   Index rows = mat.rows();
   Index cols = mat.cols();
-  Index size = std::min(rows,cols);
+  Index size = (std::min)(rows,cols);
 
   eigen_assert(hCoeffs.size() == size);
 
@@ -250,7 +250,7 @@ void householder_qr_inplace_blocked(MatrixQR& mat, HCoeffs& hCoeffs,
 
   Index rows = mat.rows();
   Index cols = mat.cols();
-  Index size = std::min(rows, cols);
+  Index size = (std::min)(rows, cols);
 
   typedef Matrix<Scalar,Dynamic,1,ColMajor,MatrixQR::MaxColsAtCompileTime,1> TempType;
   TempType tempVector;
@@ -260,12 +260,12 @@ void householder_qr_inplace_blocked(MatrixQR& mat, HCoeffs& hCoeffs,
     tempData = tempVector.data();
   }
 
-  Index blockSize = std::min(maxBlockSize,size);
+  Index blockSize = (std::min)(maxBlockSize,size);
 
-  int k = 0;
+  Index k = 0;
   for (k = 0; k < size; k += blockSize)
   {
-    Index bs = std::min(size-k,blockSize);  // actual size of the block
+    Index bs = (std::min)(size-k,blockSize);  // actual size of the block
     Index tcols = cols - k - bs;            // trailing columns
     Index brows = rows-k;                   // rows of the block
 
@@ -299,7 +299,7 @@ struct solve_retval<HouseholderQR<_MatrixType>, Rhs>
   template<typename Dest> void evalTo(Dest& dst) const
   {
     const Index rows = dec().rows(), cols = dec().cols();
-    const Index rank = std::min(rows, cols);
+    const Index rank = (std::min)(rows, cols);
     eigen_assert(rhs().rows() == rows);
 
     typename Rhs::PlainObject c(rhs());
@@ -327,7 +327,7 @@ HouseholderQR<MatrixType>& HouseholderQR<MatrixType>::compute(const MatrixType&
 {
   Index rows = matrix.rows();
   Index cols = matrix.cols();
-  Index size = std::min(rows,cols);
+  Index size = (std::min)(rows,cols);
 
   m_qr = matrix;
   m_hCoeffs.resize(size);

Eigen/src/SVD/JacobiSVD.h

@@ -569,7 +569,7 @@ void JacobiSVD<MatrixType, QRPreconditioner>::allocate(Index rows, Index cols, u
               "JacobiSVD: can't compute thin U or thin V with the FullPivHouseholderQR preconditioner. "
               "Use the ColPivHouseholderQR preconditioner instead.");
   }
-  m_diagSize = std::min(m_rows, m_cols);
+  m_diagSize = (std::min)(m_rows, m_cols);
   m_singularValues.resize(m_diagSize);
   m_matrixU.resize(m_rows, m_computeFullU ? m_rows
                           : m_computeThinU ? m_diagSize
@@ -590,6 +590,9 @@ JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType& matrix, unsig
   // only worsening the precision of U and V as we accumulate more rotations
   const RealScalar precision = RealScalar(2) * NumTraits<Scalar>::epsilon();
 
+  // limit for very small denormal numbers to be considered zero in order to avoid infinite loops (see bug 286)
+  const RealScalar considerAsZero = RealScalar(2) * std::numeric_limits<RealScalar>::denorm_min();
+
   /*** step 1. The R-SVD step: we use a QR decomposition to reduce to the case of a square matrix */
 
   if(!internal::qr_preconditioner_impl<MatrixType, QRPreconditioner, internal::PreconditionIfMoreColsThanRows>::run(*this, matrix)
@@ -617,10 +620,11 @@ JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType& matrix, unsig
       {
         // if this 2x2 sub-matrix is not diagonal already...
         // notice that this comparison will evaluate to false if any NaN is involved, ensuring that NaN's don't
-        // keep us iterating forever.
+        // keep us iterating forever. Similarly, small denormal numbers are considered zero.
         using std::max;
-        if(max(internal::abs(m_workMatrix.coeff(p,q)),internal::abs(m_workMatrix.coeff(q,p)))
-            > max(internal::abs(m_workMatrix.coeff(p,p)),internal::abs(m_workMatrix.coeff(q,q)))*precision)
+        RealScalar threshold = (max)(considerAsZero, precision * (max)(internal::abs(m_workMatrix.coeff(p,p)),
+                                                                       internal::abs(m_workMatrix.coeff(q,q))));
+        if((max)(internal::abs(m_workMatrix.coeff(p,q)),internal::abs(m_workMatrix.coeff(q,p))) > threshold)
         {
           finished = false;
 
@@ -689,7 +693,7 @@ struct solve_retval<JacobiSVD<_MatrixType, QRPreconditioner>, Rhs>
     // A = U S V^*
     // So A^{-1} = V S^{-1} U^*
 
-    Index diagSize = std::min(dec().rows(), dec().cols());
+    Index diagSize = (std::min)(dec().rows(), dec().cols());
     typename JacobiSVDType::SingularValuesType invertedSingVals(diagSize);
 
     Index nonzeroSingVals = dec().nonzeroSingularValues();
@@ -704,6 +708,13 @@ struct solve_retval<JacobiSVD<_MatrixType, QRPreconditioner>, Rhs>
 };
 } // end namespace internal
 
+/** \svd_module
+  *
+  * \return the singular value decomposition of \c *this computed by two-sided
+  * Jacobi transformations.
+  *
+  * \sa class JacobiSVD
+  */
 template<typename Derived>
 JacobiSVD<typename MatrixBase<Derived>::PlainObject>
 MatrixBase<Derived>::jacobiSvd(unsigned int computationOptions) const

Eigen/src/Sparse/AmbiVector.h

@@ -97,7 +97,7 @@ class AmbiVector
     void reallocateSparse()
     {
       Index copyElements = m_allocatedElements;
-      m_allocatedElements = std::min(Index(m_allocatedElements*1.5),m_size);
+      m_allocatedElements = (std::min)(Index(m_allocatedElements*1.5),m_size);
       Index allocSize = m_allocatedElements * sizeof(ListEl);
       allocSize = allocSize/sizeof(Scalar) + (allocSize%sizeof(Scalar)>0?1:0);
       Scalar* newBuffer = new Scalar[allocSize];

Eigen/src/Sparse/CompressedStorage.h

@@ -216,7 +216,7 @@ class CompressedStorage
     {
       Scalar* newValues  = new Scalar[size];
       Index* newIndices = new Index[size];
-      size_t copySize = std::min(size, m_size);
+      size_t copySize = (std::min)(size, m_size);
       // copy
       memcpy(newValues,  m_values,  copySize * sizeof(Scalar));
       memcpy(newIndices, m_indices, copySize * sizeof(Index));

Eigen/src/Sparse/DynamicSparseMatrix.h

@@ -141,7 +141,7 @@ class DynamicSparseMatrix
     {
       if (outerSize()>0)
       {
-        Index reserveSizePerVector = std::max(reserveSize/outerSize(),Index(4));
+        Index reserveSizePerVector = (std::max)(reserveSize/outerSize(),Index(4));
         for (Index j=0; j<outerSize(); ++j)
         {
           m_data[j].reserve(reserveSizePerVector);

Eigen/src/Sparse/SparseFuzzy.h

@@ -35,7 +35,7 @@
 //   const typename internal::nested<Derived,2>::type nested(derived());
 //   const typename internal::nested<OtherDerived,2>::type otherNested(other.derived());
 //   return    (nested - otherNested).cwise().abs2().sum()
-//          <= prec * prec * std::min(nested.cwise().abs2().sum(), otherNested.cwise().abs2().sum());
+//          <= prec * prec * (std::min)(nested.cwise().abs2().sum(), otherNested.cwise().abs2().sum());
 // }
 
 #endif // EIGEN_SPARSE_FUZZY_H

Eigen/src/Sparse/SparseMatrix.h

@@ -257,7 +257,7 @@ class SparseMatrix
           // furthermore we bound the realloc ratio to:
           //   1) reduce multiple minor realloc when the matrix is almost filled
           //   2) avoid to allocate too much memory when the matrix is almost empty
-          reallocRatio = std::min(std::max(reallocRatio,1.5f),8.f);
+          reallocRatio = (std::min)((std::max)(reallocRatio,1.5f),8.f);
         }
       }
       m_data.resize(m_data.size()+1,reallocRatio);

Eigen/src/Sparse/SparseMatrixBase.h

@@ -223,7 +223,7 @@ template<typename Derived> class SparseMatrixBase : public EigenBase<Derived>
       // thanks to shallow copies, we always eval to a tempary
       Derived temp(other.rows(), other.cols());
 
-      temp.reserve(std::max(this->rows(),this->cols())*2);
+      temp.reserve((std::max)(this->rows(),this->cols())*2);
       for (Index j=0; j<outerSize; ++j)
       {
         temp.startVec(j);
@@ -253,7 +253,7 @@ template<typename Derived> class SparseMatrixBase : public EigenBase<Derived>
         // eval without temporary
         derived().resize(other.rows(), other.cols());
         derived().setZero();
-        derived().reserve(std::max(this->rows(),this->cols())*2);
+        derived().reserve((std::max)(this->rows(),this->cols())*2);
         for (Index j=0; j<outerSize; ++j)
         {
           derived().startVec(j);

Eigen/src/Sparse/SparseSelfAdjointView.h

@@ -383,7 +383,7 @@ void permute_symm_to_symm(const MatrixType& mat, SparseMatrix<typename MatrixTyp
         continue;
                   
       Index ip = perm ? perm[i] : i;
-      count[DstUpLo==Lower ? std::min(ip,jp) : std::max(ip,jp)]++;
+      count[DstUpLo==Lower ? (std::min)(ip,jp) : (std::max)(ip,jp)]++;
     }
   }
   dest._outerIndexPtr()[0] = 0;
@@ -403,8 +403,8 @@ void permute_symm_to_symm(const MatrixType& mat, SparseMatrix<typename MatrixTyp
         continue;
                   
       Index ip = perm? perm[i] : i;
-      Index k = count[DstUpLo==Lower ? std::min(ip,jp) : std::max(ip,jp)]++;
-      dest._innerIndexPtr()[k] = DstUpLo==Lower ? std::max(ip,jp) : std::min(ip,jp);
+      Index k = count[DstUpLo==Lower ? (std::min)(ip,jp) : (std::max)(ip,jp)]++;
+      dest._innerIndexPtr()[k] = DstUpLo==Lower ? (std::max)(ip,jp) : (std::min)(ip,jp);
       
       if((DstUpLo==Lower && ip<jp) || (DstUpLo==Upper && ip>jp))
         dest._valuePtr()[k] = conj(it.value());

Eigen/src/Sparse/SparseSparseProduct.h

@@ -45,7 +45,7 @@ static void sparse_product_impl2(const Lhs& lhs, const Rhs& rhs, ResultType& res
   // estimate the number of non zero entries
   float ratioLhs = float(lhs.nonZeros())/(float(lhs.rows())*float(lhs.cols()));
   float avgNnzPerRhsColumn = float(rhs.nonZeros())/float(cols);
-  float ratioRes = std::min(ratioLhs * avgNnzPerRhsColumn, 1.f);
+  float ratioRes = (std::min)(ratioLhs * avgNnzPerRhsColumn, 1.f);
 
 //  int t200 = rows/(log2(200)*1.39);
 //  int t = (rows*100)/139;
@@ -131,7 +131,7 @@ static void sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res)
   // estimate the number of non zero entries
   float ratioLhs = float(lhs.nonZeros())/(float(lhs.rows())*float(lhs.cols()));
   float avgNnzPerRhsColumn = float(rhs.nonZeros())/float(cols);
-  float ratioRes = std::min(ratioLhs * avgNnzPerRhsColumn, 1.f);
+  float ratioRes = (std::min)(ratioLhs * avgNnzPerRhsColumn, 1.f);
 
   // mimics a resizeByInnerOuter:
   if(ResultType::IsRowMajor)
@@ -143,7 +143,7 @@ static void sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res)
   for (Index j=0; j<cols; ++j)
   {
     // let's do a more accurate determination of the nnz ratio for the current column j of res
-    //float ratioColRes = std::min(ratioLhs * rhs.innerNonZeros(j), 1.f);
+    //float ratioColRes = (std::min)(ratioLhs * rhs.innerNonZeros(j), 1.f);
     // FIXME find a nice way to get the number of nonzeros of a sub matrix (here an inner vector)
     float ratioColRes = ratioRes;
     tempVector.init(ratioColRes);

Eigen/src/Sparse/TriangularSolver.h

@@ -171,7 +171,7 @@ void SparseTriangularView<ExpressionType,Mode>::solveInPlace(MatrixBase<OtherDer
   eigen_assert(m_matrix.cols() == m_matrix.rows());
   eigen_assert(m_matrix.cols() == other.rows());
   eigen_assert(!(Mode & ZeroDiag));
-  eigen_assert(Mode & (Upper|Lower));
+  eigen_assert((Mode & (Upper|Lower)) != 0);
 
   enum { copy = internal::traits<OtherDerived>::Flags & RowMajorBit };
 
@@ -298,7 +298,7 @@ void SparseTriangularView<ExpressionType,Mode>::solveInPlace(SparseMatrixBase<Ot
   eigen_assert(m_matrix.cols() == m_matrix.rows());
   eigen_assert(m_matrix.cols() == other.rows());
   eigen_assert(!(Mode & ZeroDiag));
-  eigen_assert(Mode & (Upper|Lower));
+  eigen_assert((Mode & (Upper|Lower)) != 0);
 
 //   enum { copy = internal::traits<OtherDerived>::Flags & RowMajorBit };
 

Eigen/src/StlSupport/StdVector.h

@@ -28,32 +28,24 @@
 
 #include "Eigen/src/StlSupport/details.h"
 
-// Define the explicit instantiation (e.g. necessary for the Intel compiler)
-#if defined(__INTEL_COMPILER) || defined(__GNUC__)
-  #define EIGEN_EXPLICIT_STL_VECTOR_INSTANTIATION(...) template class std::vector<__VA_ARGS__, EIGEN_ALIGNED_ALLOCATOR<__VA_ARGS__> >;
-#else
-  #define EIGEN_EXPLICIT_STL_VECTOR_INSTANTIATION(...)
-#endif
-
 /**
  * This section contains a convenience MACRO which allows an easy specialization of
  * std::vector such that for data types with alignment issues the correct allocator
  * is used automatically.
  */
 #define EIGEN_DEFINE_STL_VECTOR_SPECIALIZATION(...) \
-EIGEN_EXPLICIT_STL_VECTOR_INSTANTIATION(__VA_ARGS__) \
 namespace std \
 { \
-  template<typename _Ay> \
-  class vector<__VA_ARGS__, _Ay>  \
+  template<> \
+  class vector<__VA_ARGS__, std::allocator<__VA_ARGS__> >  \
     : public vector<__VA_ARGS__, EIGEN_ALIGNED_ALLOCATOR<__VA_ARGS__> > \
   { \
     typedef vector<__VA_ARGS__, EIGEN_ALIGNED_ALLOCATOR<__VA_ARGS__> > vector_base; \
   public: \
     typedef __VA_ARGS__ value_type; \
-    typedef typename vector_base::allocator_type allocator_type; \
-    typedef typename vector_base::size_type size_type;  \
-    typedef typename vector_base::iterator iterator;  \
+    typedef vector_base::allocator_type allocator_type; \
+    typedef vector_base::size_type size_type;  \
+    typedef vector_base::iterator iterator;  \
     explicit vector(const allocator_type& a = allocator_type()) : vector_base(a) {}  \
     template<typename InputIterator> \
     vector(InputIterator first, InputIterator last, const allocator_type& a = allocator_type()) : vector_base(first, last, a) {} \

bench/btl/generic_bench/btl.hh

@@ -39,7 +39,7 @@
 #endif
 
 #if (defined __GNUC__)
-#define BTL_ASM_COMMENT(X)  asm("#"X)
+#define BTL_ASM_COMMENT(X)  asm("#" X)
 #else
 #define BTL_ASM_COMMENT(X)
 #endif

debug/gdb/printers.py

@@ -56,12 +56,12 @@ class EigenMatrixPrinter:
 		template_params = m.split(',')
 		template_params = map(lambda x:x.replace(" ", ""), template_params)
 
-		if template_params[1] == '-0x00000000000000001':
+		if template_params[1] == '-0x00000000000000001' or template_params[1] == '-0x000000001':
 			self.rows = val['m_storage']['m_rows']
 		else:
 			self.rows = int(template_params[1])
 		
-		if template_params[2] == '-0x00000000000000001':
+		if template_params[2] == '-0x00000000000000001' or template_params[2] == '-0x000000001':
 			self.cols = val['m_storage']['m_cols']
 		else:
 			self.cols = int(template_params[2])

doc/C00_QuickStartGuide.dox

@@ -63,7 +63,7 @@ The output is as follows:
 
 The second example starts by declaring a 3-by-3 matrix \c m which is initialized using the \link DenseBase::Random(Index,Index) Random() \endlink method with random values between -1 and 1. The next line applies a linear mapping such that the values are between 10 and 110. The function call \link DenseBase::Constant(Index,Index,const Scalar&) MatrixXd::Constant\endlink(3,3,1.2) returns a 3-by-3 matrix expression having all coefficients equal to 1.2. The rest is standard arithmetics.
 
-The next line of the \c main function introduces a new type: \c VectorXd. This represents a (column) vector of arbitrary size. Here, the vector \c v is created to contains \c 3 coefficients which are left unitialized. The one but last line uses the so-called comma-initializer, explained in \ref TutorialAdvancedInitialization, to set all coefficients of the vector \c v to be as follows:
+The next line of the \c main function introduces a new type: \c VectorXd. This represents a (column) vector of arbitrary size. Here, the vector \c v is created to contain \c 3 coefficients which are left unitialized. The one but last line uses the so-called comma-initializer, explained in \ref TutorialAdvancedInitialization, to set all coefficients of the vector \c v to be as follows:
 
 \f[
 v =

doc/C03_TutorialArrayClass.dox

@@ -155,7 +155,7 @@ this doesn't have any runtime cost (provided that you let your compiler optimize
 Both \link MatrixBase::array() .array() \endlink and \link ArrayBase::matrix() .matrix() \endlink 
 can be used as rvalues and as lvalues.
 
-Mixing matrices and arrays in an expression is forbidden with Eigen. For instance, you cannot add a amtrix and
+Mixing matrices and arrays in an expression is forbidden with Eigen. For instance, you cannot add a matrix and
 array directly; the operands of a \c + operator should either both be matrices or both be arrays. However,
 it is easy to convert from one to the other with \link MatrixBase::array() .array() \endlink and 
 \link ArrayBase::matrix() .matrix()\endlink. The exception to this rule is the assignment operator: it is

doc/C07_TutorialReductionsVisitorsBroadcasting.dox

@@ -93,7 +93,7 @@ Array.
 
 The arguments passed to a visitor are pointers to the variables where the
 row and column position are to be stored. These variables should be of type
-\link DenseBase::Index Index \endlink (FIXME: link ok?), as shown below:
+\link DenseBase::Index Index \endlink, as shown below:
 
 <table class="example">
 <tr><th>Example:</th><th>Output:</th></tr>
@@ -141,7 +141,7 @@ return a 'column-vector'</b>
 
 \subsection TutorialReductionsVisitorsBroadcastingPartialReductionsCombined Combining partial reductions with other operations
 It is also possible to use the result of a partial reduction to do further processing.
-Here is another example that aims to find the column whose sum of elements is the maximum
+Here is another example that finds the column whose sum of elements is the maximum
  within a matrix. With column-wise partial reductions this can be coded as:
 
 <table class="example">

doc/C08_TutorialGeometry.dox

@@ -6,7 +6,7 @@ namespace Eigen {
 \li \b Previous: \ref TutorialReductionsVisitorsBroadcasting
 \li \b Next: \ref TutorialSparse
 
-In this tutorial, we will shortly introduce the many possibilities offered by the \ref Geometry_Module "geometry module", namely 2D and 3D rotations and projective or affine transformations.
+In this tutorial, we will briefly introduce the many possibilities offered by the \ref Geometry_Module "geometry module", namely 2D and 3D rotations and projective or affine transformations.
 
 \b Table \b of \b contents
   - \ref TutorialGeoElementaryTransformations
@@ -51,10 +51,10 @@ AngleAxis<float> aa(angle_in_radian, Vector3f(ax,ay,az));\endcode</td></tr>
 Quaternion<float> q;  q = AngleAxis<float>(angle_in_radian, axis);\endcode</td></tr>
 <tr class="alt"><td>
 N-D Scaling</td><td>\code
-Scaling<float,2>(sx, sy)
-Scaling<float,3>(sx, sy, sz)
-Scaling<float,N>(s)
-Scaling<float,N>(vecN)\endcode</td></tr>
+Scaling(sx, sy)
+Scaling(sx, sy, sz)
+Scaling(s)
+Scaling(vecN)\endcode</td></tr>
 <tr><td>
 N-D Translation</td><td>\code
 Translation<float,2>(tx, ty)
@@ -64,13 +64,13 @@ Translation<float,N>(vecN)\endcode</td></tr>
 <tr class="alt"><td>
 N-D \ref TutorialGeoTransform "Affine transformation"</td><td>\code
 Transform<float,N,Affine> t = concatenation_of_any_transformations;
-Transform<float,3,Affine> t = Translation3f(p) * AngleAxisf(a,axis) * Scaling3f(s);\endcode</td></tr>
+Transform<float,3,Affine> t = Translation3f(p) * AngleAxisf(a,axis) * Scaling(s);\endcode</td></tr>
 <tr><td>
 N-D Linear transformations \n
 <em class=note>(pure rotations, \n scaling, etc.)</em></td><td>\code
 Matrix<float,N> t = concatenation_of_rotations_and_scalings;
-Matrix<float,2> t = Rotation2Df(a) * Scaling2f(s);
-Matrix<float,3> t = AngleAxisf(a,axis) * Scaling3f(s);\endcode</td></tr>
+Matrix<float,2> t = Rotation2Df(a) * Scaling(s);
+Matrix<float,3> t = AngleAxisf(a,axis) * Scaling(s);\endcode</td></tr>
 </table>
 
 <strong>Notes on rotations</strong>\n To transform more than a single vector the preferred
@@ -78,7 +78,7 @@ representations are rotation matrices, while for other usages Quaternion is the
 representation of choice as they are compact, fast and stable. Finally Rotation2D and
 AngleAxis are mainly convenient types to create other rotation objects.
 
-<strong>Notes on Translation and Scaling</strong>\n Likewise AngleAxis, these classes were
+<strong>Notes on Translation and Scaling</strong>\n Like AngleAxis, these classes were
 designed to simplify the creation/initialization of linear (Matrix) and affine (Transform)
 transformations. Nevertheless, unlike AngleAxis which is inefficient to use, these classes
 might still be interesting to write generic and efficient algorithms taking as input any
@@ -92,8 +92,8 @@ Rotation2Df r;  r  = Matrix2f(..);       // assumes a pure rotation matrix
 AngleAxisf aa;  aa = Quaternionf(..);
 AngleAxisf aa;  aa = Matrix3f(..);       // assumes a pure rotation matrix
 Matrix2f m;     m  = Rotation2Df(..);
-Matrix3f m;     m  = Quaternionf(..);       Matrix3f m;   m = Scaling3f(..);
-Affine3f m;     m  = AngleAxis3f(..);       Affine3f m;   m = Scaling3f(..);
+Matrix3f m;     m  = Quaternionf(..);       Matrix3f m;   m = Scaling(..);
+Affine3f m;     m  = AngleAxis3f(..);       Affine3f m;   m = Scaling(..);
 Affine3f m;     m  = Translation3f(..);     Affine3f m;   m = Matrix3f(..);
 \endcode</td></tr>
 </table>
@@ -147,7 +147,7 @@ OpenGL compatibility \b 3D </td><td>\code
 glLoadMatrixf(t.data());\endcode</td></tr>
 <tr class="alt"><td>
 OpenGL compatibility \b 2D </td><td>\code
-Affine3f aux(Affine3f::Identity);
+Affine3f aux(Affine3f::Identity());
 aux.linear().topLeftCorner<2,2>() = t.linear();
 aux.translation().start<2>() = t.translation();
 glLoadMatrixf(aux.data());\endcode</td></tr>
@@ -186,7 +186,7 @@ matNxN = t.extractRotation();
 While transformation objects can be created and updated concatenating elementary transformations,
 the Transform class also features a procedural API:
 <table class="manual">
-<tr><th></th><th>procedurale API</th><th>equivalent natural API </th></tr>
+<tr><th></th><th>procedural API</th><th>equivalent natural API </th></tr>
 <tr><td>Translation</td><td>\code
 t.translate(Vector_(tx,ty,..));
 t.pretranslate(Vector_(tx,ty,..));
@@ -207,10 +207,10 @@ t.scale(s);
 t.prescale(Vector_(sx,sy,..));
 t.prescale(s);
 \endcode</td><td>\code
-t *= Scaling_(sx,sy,..);
-t *= Scaling_(s);
-t = Scaling_(sx,sy,..) * t;
-t = Scaling_(s) * t;
+t *= Scaling(sx,sy,..);
+t *= Scaling(s);
+t = Scaling(sx,sy,..) * t;
+t = Scaling(s) * t;
 \endcode</td></tr>
 <tr class="alt"><td>Shear transformation \n ( \b 2D \b only ! )</td><td>\code
 t.shear(sx,sy);
@@ -224,7 +224,7 @@ Note that in both API, any many transformations can be concatenated in a single
 t.pretranslate(..).rotate(..).translate(..).scale(..);
 \endcode</td></tr>
 <tr><td>\code
-t = Translation_(..) * t * RotationType(..) * Translation_(..) * Scaling_(..);
+t = Translation_(..) * t * RotationType(..) * Translation_(..) * Scaling(..);
 \endcode</td></tr>
 </table>
 
@@ -234,7 +234,7 @@ t = Translation_(..) * t * RotationType(..) * Translation_(..) * Scaling_(..);
 <table class="manual">
 <tr><td style="max-width:30em;">
 Euler angles might be convenient to create rotation objects.
-On the other hand, since there exist 24 differents convension,they are pretty confusing to use. This example shows how
+On the other hand, since there exist 24 different conventions, they are pretty confusing to use. This example shows how
 to create a rotation matrix according to the 2-1-2 convention.</td><td>\code
 Matrix3f m;
 m = AngleAxisf(angle1, Vector3f::UnitZ())

doc/C09_TutorialSparse.dox

@@ -4,7 +4,7 @@ namespace Eigen {
     \ingroup Tutorial
 
 \li \b Previous: \ref TutorialGeometry
-\li \b Next: TODO
+\li \b Next: \ref TutorialMapClass
 
 \b Table \b of \b contents \n
   - \ref TutorialSparseIntro
@@ -55,17 +55,17 @@ and its internal representation using the Compressed Column Storage format:
 </table>
 Outer indices:<table class="manual"><tr><td>0</td><td>2</td><td>4</td><td>5</td><td>6</td><td>\em 7 </td></tr></table>
 
-As you can guess, here the storage order is even more important than with dense matrix. We will therefore often make a clear difference between the \em inner and \em outer dimensions. For instance, it is easy to loop over the coefficients of an \em inner \em vector (e.g., a column of a column-major matrix), but completely inefficient to do the same for an \em outer \em vector (e.g., a row of a col-major matrix).
+As you might guess, here the storage order is even more important than with dense matrices. We will therefore often make a clear difference between the \em inner and \em outer dimensions. For instance, it is efficient to loop over the coefficients of an \em inner \em vector (e.g., a column of a column-major matrix), but completely inefficient to do the same for an \em outer \em vector (e.g., a row of a column-major matrix).
 
 The SparseVector class implements the same compressed storage scheme but, of course, without any outer index buffer.
 
-Since all nonzero coefficients of such a matrix are sequentially stored in memory, random insertion of new nonzeros can be extremely costly. To overcome this limitation, Eigen's sparse module provides a DynamicSparseMatrix class which is basically implemented as an array of SparseVector. In other words, a DynamicSparseMatrix is a SparseMatrix where the values and inner-indices arrays have been splitted into multiple small and resizable arrays. Assuming the number of nonzeros per inner vector is relatively low, this slight modification allow for very fast random insertion at the cost of a slight memory overhead and a lost of compatibility with other sparse libraries used by some of our highlevel solvers. Note that the major memory overhead comes from the extra memory preallocated by each inner vector to avoid an expensive memory reallocation at every insertion.
+Since all nonzero coefficients of such a matrix are sequentially stored in memory, inserting a new nonzero near the "beginning" of the matrix can be extremely costly. As described below (\ref TutorialSparseFilling), one strategy is to fill nonzero coefficients in order. In cases where this is not possible, Eigen's sparse module also provides a DynamicSparseMatrix class which allows efficient random insertion. DynamicSparseMatrix is essentially implemented as an array of SparseVector, where the values and inner-indices arrays have been split into multiple small and resizable arrays. Assuming the number of nonzeros per inner vector is relatively small, this modification allows for very fast random insertion at the cost of a slight memory overhead (due to extra memory preallocated by each inner vector to avoid an expensive memory reallocation at every insertion) and a loss of compatibility with other sparse libraries used by some of our high-level solvers. Once complete, a DynamicSparseMatrix can be converted to a SparseMatrix to permit usage of these sparse libraries.
 
-To summarize, it is recommanded to use a SparseMatrix whenever this is possible, and reserve the use of DynamicSparseMatrix for matrix assembly purpose when a SparseMatrix is not flexible enough. The respective pro/cons of both representations are summarized in the following table:
+To summarize, it is recommended to use SparseMatrix whenever possible, and reserve the use of DynamicSparseMatrix to assemble a sparse matrix in cases when a SparseMatrix is not flexible enough. The respective pros/cons of both representations are summarized in the following table:
 
 <table class="manual">
 <tr><td></td> <td>SparseMatrix</td><td>DynamicSparseMatrix</td></tr>
-<tr><td>memory usage</td><td>***</td><td>**</td></tr>
+<tr><td>memory efficiency</td><td>***</td><td>**</td></tr>
 <tr><td>sorted insertion</td><td>***</td><td>***</td></tr>
 <tr><td>random insertion \n in sorted inner vector</td><td>**</td><td>**</td></tr>
 <tr><td>sorted insertion \n in random inner vector</td><td>-</td><td>***</td></tr>
@@ -82,7 +82,7 @@ To summarize, it is recommanded to use a SparseMatrix whenever this is possible,
 
 \b Matrix \b and \b vector \b properties \n
 
-Here mat and vec represents any sparse-matrix and sparse-vector types respectively.
+Here mat and vec represent any sparse-matrix and sparse-vector type, respectively.
 
 <table class="manual">
 <tr><td>Standard \n dimensions</td><td>\code
@@ -96,7 +96,7 @@ mat.innerSize()
 mat.outerSize()\endcode</td>
 <td></td>
 </tr>
-<tr><td>Number of non \n zero coefficiens</td><td>\code
+<tr><td>Number of non \n zero coefficients</td><td>\code
 mat.nonZeros() \endcode</td>
 <td>\code
 vec.nonZeros() \endcode</td></tr>
@@ -105,12 +105,12 @@ vec.nonZeros() \endcode</td></tr>
 
 \b Iterating \b over \b the \b nonzero \b coefficients \n
 
-Iterating over the coefficients of a sparse matrix can be done only in the same order than the storage order. Here is an example:
+Iterating over the coefficients of a sparse matrix can be done only in the same order as the storage order. Here is an example:
 <table class="manual">
 <tr><td>
 \code
 SparseMatrixType mat(rows,cols);
-for (int k=0; k\<m1.outerSize(); ++k)
+for (int k=0; k<m1.outerSize(); ++k)
   for (SparseMatrixType::InnerIterator it(mat,k); it; ++it)
   {
     it.value();
@@ -254,7 +254,7 @@ if(!lu_of_A.solve(b,&x)) {
 
 See also the class SparseLLT, class SparseLU, and class SparseLDLT.
 
-\li \b Next: TODO
+\li \b Next: \ref TutorialMapClass
 
 */
 

doc/C10_TutorialMapClass.dox

@@ -0,0 +1,96 @@
+namespace Eigen {
+
+/** \page TutorialMapClass Tutorial page 10 - Interfacing with C/C++ arrays and external libraries: the %Map class
+
+\ingroup Tutorial
+
+\li \b Previous: \ref TutorialSparse
+\li \b Next: \ref TODO
+
+This tutorial page explains how to work with "raw" C++ arrays.  This can be useful in a variety of contexts, particularly when "importing" vectors and matrices from other libraries into Eigen.
+
+\b Table \b of \b contents
+  - \ref TutorialMapIntroduction
+  - \ref TutorialMapTypes
+  - \ref TutorialMapUsing
+  - \ref TutorialMapPlacementNew
+
+\section TutorialMapIntroduction Introduction
+
+Occasionally you may have a pre-defined array of numbers that you want to use within Eigen as a vector or matrix. While one option is to make a copy of the data, most commonly you probably want to re-use this memory as an Eigen type. Fortunately, this is very easy with the Map class.
+
+\section TutorialMapTypes Map types and declaring Map variables
+
+A Map object has a type defined by its Eigen equivalent:
+\code
+Map<Matrix<typename Scalar, int RowsAtCompileTime, int ColsAtCompileTime> >
+\endcode
+Note that, in this default case, a Map requires just a single template parameter.  
+
+To construct a Map variable, you need two other pieces of information: a pointer to the region of memory defining the array of coefficients, and the desired shape of the matrix or vector.  For example, to define a matrix of \c float with sizes determined at compile time, you might do the following:
+\code
+Map<MatrixXf> mf(pf,rows,columns);
+\endcode
+where \c pf is a \c float \c * pointing to the array of memory.  A fixed-size read-only vector of integers might be declared as
+\code
+Map<const Vector4i> mi(pi);
+\endcode
+where \c pi is an \c int \c *. In this case the size does not have to be passed to the constructor, because it is already specified by the Matrix/Array type.
+
+Note that Map does not have a default constructor; you \em must pass a pointer to intialize the object. However, you can work around this requirement (see \ref TutorialMapPlacementNew).
+
+Map is flexible enough to accomodate a variety of different data representations.  There are two other (optional) template parameters:
+\code
+Map<typename MatrixType,
+    int MapOptions,
+    typename StrideType>
+\endcode
+\li \c MapOptions specifies whether the pointer is \c #Aligned, or \c #Unaligned.  The default is \c #Unaligned.
+\li \c StrideType allows you to specify a custom layout for the memory array, using the Stride class.  One example would be to specify that the data array is organized in row-major format:
+<table class="example">
+<tr><th>Example:</th><th>Output:</th></tr>
+<tr>
+<td>\include Tutorial_Map_rowmajor.cpp </td>
+<td>\verbinclude Tutorial_Map_rowmajor.out </td>
+</table>
+However, Stride is even more flexible than this; for details, see the documentation for the Map and Stride classes.
+
+\section TutorialMapUsing Using Map variables
+
+You can use a Map object just like any other Eigen type:
+<table class="example">
+<tr><th>Example:</th><th>Output:</th></tr>
+<tr>
+<td>\include Tutorial_Map_using.cpp </td>
+<td>\verbinclude Tutorial_Map_using.out </td>
+</table>
+
+However, when writing functions taking Eigen types, it is important to realize that a Map type is \em not identical to its Dense equivalent.  See \ref TopicFunctionTakingEigenTypesMultiarguments for details.
+
+\section TutorialMapPlacementNew Changing the mapped array
+
+It is possible to change the array of a Map object after declaration, using the C++ "placement new" syntax:
+<table class="example">
+<tr><th>Example:</th><th>Output:</th></tr>
+<tr>
+<td>\include Map_placement_new.cpp </td>
+<td>\verbinclude Map_placement_new.out </td>
+</table>
+Despite appearances, this does not invoke the memory allocator, because the syntax specifies the location for storing the result.
+
+This syntax makes it possible to declare a Map object without first knowing the mapped array's location in memory:
+\code
+Map<Matrix3f> A(NULL);  // don't try to use this matrix yet!
+VectorXf b(n_matrices);
+for (int i = 0; i < n_matrices; i++)
+{
+  new (&A) Map<Matrix3f>(get_matrix_pointer(i));
+  b(i) = A.trace();
+}
+\endcode
+
+\li \b Next: \ref TODO
+
+*/
+
+}

doc/CMakeLists.txt

@@ -64,9 +64,14 @@ add_custom_target(
 
 add_dependencies(doc-eigen-prerequisites all_snippets all_examples)
 add_dependencies(doc-unsupported-prerequisites unsupported_snippets unsupported_examples)
+
 add_custom_target(doc ALL
   COMMAND doxygen Doxyfile-unsupported
   COMMAND doxygen
   COMMAND doxygen Doxyfile-unsupported # run doxygen twice to get proper eigen <=> unsupported cross references
+  COMMAND ${CMAKE_COMMAND} -E rename html eigen-doc
+  COMMAND ${CMAKE_COMMAND} -E tar cvfz eigen-doc/eigen-doc.tgz eigen-doc/*.html eigen-doc/*.map eigen-doc/*.png eigen-doc/*.css eigen-doc/*.js eigen-doc/*.txt eigen-doc/unsupported
+  COMMAND ${CMAKE_COMMAND} -E rename eigen-doc html
   WORKING_DIRECTORY ${Eigen_BINARY_DIR}/doc)
+
 add_dependencies(doc doc-eigen-prerequisites doc-unsupported-prerequisites)

doc/I13_FunctionsTakingEigenTypes.dox

@@ -47,9 +47,9 @@ void print_block(const DenseBase<Derived>& b, int x, int y, int r, int c)
 Prints the maximum coefficient of the array or array-expression.
 \code
 template <typename Derived>
-void print_max(const ArrayBase<Derived>& a, const ArrayBase<Derived>& b)
+void print_max_coeff(const ArrayBase<Derived> &a)
 {
-  std::cout << "max: " << (a.max(b)).maxCoeff() << std::endl;
+  std::cout << "max: " << a.maxCoeff() << std::endl;
 }
 \endcode
 <b> %MatrixBase Example </b><br/><br/>
@@ -63,6 +63,21 @@ void print_inv_cond(const MatrixBase<Derived>& a)
   std::cout << "inv cond: " << sing_vals(sing_vals.size()-1) / sing_vals(0) << std::endl;
 }
 \endcode
+<b> Multiple templated arguments example </b><br/><br/>
+Calculate the Euclidean distance between two points.
+\code
+template <typename DerivedA,typename DerivedB>
+typename DerivedA::Scalar squaredist(const MatrixBase<DerivedA>& p1,const MatrixBase<DerivedB>& p2)
+{
+  return (p1-p2).squaredNorm();
+}
+\endcode
+Notice that we used two template parameters, one per argument. This permits the function to handle inputs of different types, e.g.,
+\code
+squaredist(v1,2*v2)
+\endcode
+where the first argument \c v1 is a vector and the second argument \c 2*v2 is an expression.
+<br/><br/>
 
 These examples are just intended to give the reader a first impression of how functions can be written which take a plain and constant Matrix or Array argument. They are also intended to give the reader an idea about the most common base classes being the optimal candidates for functions. In the next section we will look in more detail at an example and the different ways it can be implemented, while discussing each implementation's problems and advantages. For the discussion below, Matrix and Array as well as MatrixBase and ArrayBase can be exchanged and all arguments still hold.
 
@@ -128,6 +143,8 @@ The implementation above does now not only work with temporary expressions but i
 
 \b Note: The const cast hack will only work with templated functions. It will not work with the MatrixXf implementation because it is not possible to cast a Block expression to a Matrix reference!
 
+
+
 \section TopicResizingInGenericImplementations How to resize matrices in generic implementations?
 
 One might think we are done now, right? This is not completely true because in order for our covariance function to be generically applicable, we want the follwing code to work

doc/Overview.dox

@@ -8,7 +8,7 @@ o /** \mainpage Eigen
   | \ref QuickRefPage         "Short reference"
 </div>
 
-This is the API documentation for Eigen3.
+This is the API documentation for Eigen3. You can <a href="eigen-doc.tgz">download</a> it as a tgz archive for offline reading.
 
 Eigen2 users: here is a \ref Eigen2ToEigen3 guide to help porting your application.
 
@@ -27,6 +27,7 @@ For a first contact with Eigen, the best place is to have a look at the \ref Get
     - \ref TutorialReductionsVisitorsBroadcasting
     - \ref TutorialGeometry
     - \ref TutorialSparse
+    - \ref TutorialMapClass
   - \ref QuickRefPage
   - <b>Advanced topics</b>
     - \ref TopicAliasing

doc/QuickReference.dox

@@ -645,11 +645,11 @@ m3 -= s1 * m3.adjoint() * m1.selfadjointView<Eigen::Lower>();\endcode
 </td></tr>
 <tr><td>
 Rank 1 and rank K update: \n
-\f$ upper(M_1) \mathrel{{+}{=}} s_1 M_2^* M_2 \f$ \n
-\f$ lower(M_1) \mathbin{{-}{=}} M_2 M_2^* \f$
+\f$ upper(M_1) \mathrel{{+}{=}} s_1 M_2 M_2^* \f$ \n
+\f$ lower(M_1) \mathbin{{-}{=}} M_2^* M_2 \f$
 </td><td>\n \code
 M1.selfadjointView<Eigen::Upper>().rankUpdate(M2,s1);
-m1.selfadjointView<Eigen::Lower>().rankUpdate(m2.adjoint(),-1); \endcode
+M1.selfadjointView<Eigen::Lower>().rankUpdate(M2.adjoint(),-1); \endcode
 </td></tr>
 <tr><td>
 Rank 2 update: (\f$ M \mathrel{{+}{=}} s u v^* + s v u^* \f$)

doc/TopicLinearAlgebraDecompositions.dox

@@ -6,7 +6,6 @@ namespace Eigen {
 \section TopicLinAlgBigTable Catalogue of decompositions offered by Eigen
 
 <table class="manual-vl">
-
     <tr>
         <th class="meta"></th>
         <th class="meta" colspan="5">Generic information, not Eigen-specific</th>

doc/examples/TutorialLinAlgSelfAdjointEigenSolver.cpp

@@ -10,8 +10,9 @@ int main()
    A << 1, 2, 2, 3;
    cout << "Here is the matrix A:\n" << A << endl;
    SelfAdjointEigenSolver<Matrix2f> eigensolver(A);
+   if (eigensolver.info() != Success) abort();
    cout << "The eigenvalues of A are:\n" << eigensolver.eigenvalues() << endl;
-   cout << "Here's a matrix whose columns are eigenvectors of A "
+   cout << "Here's a matrix whose columns are eigenvectors of A \n"
         << "corresponding to these eigenvalues:\n"
         << eigensolver.eigenvectors() << endl;
 }

doc/snippets/Tutorial_Map_rowmajor.cpp

@@ -0,0 +1,7 @@
+int array[8];
+for(int i = 0; i < 8; ++i) array[i] = i;
+cout << "Column-major:\n" << Map<Matrix<int,2,4> >(array) << endl;
+cout << "Row-major:\n" << Map<Matrix<int,2,4,RowMajor> >(array) << endl;
+cout << "Row-major using stride:\n" <<
+  Map<Matrix<int,2,4>, Unaligned, Stride<1,4> >(array) << endl;
+

doc/snippets/Tutorial_Map_using.cpp

@@ -0,0 +1,21 @@
+typedef Matrix<float,1,Dynamic> MatrixType;
+typedef Map<MatrixType> MapType;
+typedef Map<const MatrixType> MapTypeConst;   // a read-only map
+const int n_dims = 5;
+  
+MatrixType m1(n_dims), m2(n_dims);
+m1.setRandom();
+m2.setRandom();
+float *p = &m2(0);  // get the address storing the data for m2
+MapType m2map(p,m2.size());   // m2map shares data with m2
+MapTypeConst m2mapconst(p,m2.size());  // a read-only accessor for m2
+
+cout << "m1: " << m1 << endl;
+cout << "m2: " << m2 << endl;
+cout << "Squared euclidean distance: " << (m1-m2).squaredNorm() << endl;
+cout << "Squared euclidean distance, using map: " <<
+  (m1-m2map).squaredNorm() << endl;
+m2map(3) = 7;   // this will change m2, since they share the same array
+cout << "Updated m2: " << m2 << endl;
+cout << "m2 coefficient 2, constant accessor: " << m2mapconst(2) << endl;
+/* m2mapconst(2) = 5; */   // this yields a compile-time error

doc/unsupported_modules.dox

@@ -1,64 +0,0 @@
-
-namespace Eigen {
-
-/** \defgroup Unsupported_modules Unsupported modules
-  *
-  * The unsupported modules are contributions from various users. They are
-  * provided "as is", without any support. Nevertheless, some of them are
-  * subject to be included in Eigen in the future.
-  */
-
-// please list here all unsupported modules
-
-/** \ingroup Unsupported_modules
-  * \defgroup AdolcForward_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup AlignedVector3_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup AutoDiff_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup BVH_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup FFT_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup IterativeSolvers_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup MatrixFunctions_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup MoreVectorization */
-
-/** \ingroup Unsupported_modules
-  * \defgroup NonLinearOptimization_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup NumericalDiff_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup Polynomials_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup Skyline_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup CholmodSupport_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup SuperLUSupport_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup UmfPackSupport_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup SparseExtra_Module */
-
-/** \ingroup Unsupported_modules
-  * \defgroup MpfrcxxSupport_Module */
-
-} // namespace Eigen

scripts/eigen_gen_docs

@@ -8,14 +8,12 @@ USER=${USER:-'orzel'}
 #ulimit -v 1024000
 
 # step 1 : build
-# todo if 'build is not there, create one:
 mkdir build -p
 (cd build && cmake .. && make doc) || { echo "make failed"; exit 1; }
-#todo: n+1 where n = number of cpus
 
 #step 2 : upload
-# (the '/' at the end of path are very important, see rsync documentation)
-rsync -az build/doc/html/ $USER@ssh.tuxfamily.org:eigen/eigen.tuxfamily.org-web/htdocs/dox-3.0/ || { echo "upload failed"; exit 1; }
+# (the '/' at the end of path is very important, see rsync documentation)
+rsync -az --no-p --delete build/doc/html/ $USER@ssh.tuxfamily.org:eigen/eigen.tuxfamily.org-web/htdocs/dox-3.0/ || { echo "upload failed"; exit 1; }
 
 echo "Uploaded successfully"
 

test/CMakeLists.txt

@@ -121,7 +121,7 @@ ei_add_test(nullary)
 ei_add_test(nesting_ops "${CMAKE_CXX_FLAGS_DEBUG}")
 ei_add_test(zerosized)
 ei_add_test(dontalign)
-
+ei_add_test(sizeoverflow)
 ei_add_test(prec_inverse_4x4)
 
 string(TOLOWER "${CMAKE_CXX_COMPILER}" cmake_cxx_compiler_tolower)

test/adjoint.cpp

@@ -65,7 +65,7 @@ template<typename MatrixType> void adjoint(const MatrixType& m)
   // check basic properties of dot, norm, norm2
   typedef typename NumTraits<Scalar>::Real RealScalar;
   
-  RealScalar ref = NumTraits<Scalar>::IsInteger ? 0 : std::max((s1 * v1 + s2 * v2).norm(),v3.norm());
+  RealScalar ref = NumTraits<Scalar>::IsInteger ? 0 : (std::max)((s1 * v1 + s2 * v2).norm(),v3.norm());
   VERIFY(test_isApproxWithRef((s1 * v1 + s2 * v2).dot(v3),     internal::conj(s1) * v1.dot(v3) + internal::conj(s2) * v2.dot(v3), ref));
   VERIFY(test_isApproxWithRef(v3.dot(s1 * v1 + s2 * v2),       s1*v3.dot(v1)+s2*v3.dot(v2), ref));
   VERIFY_IS_APPROX(internal::conj(v1.dot(v2)),               v2.dot(v1));
@@ -76,7 +76,7 @@ template<typename MatrixType> void adjoint(const MatrixType& m)
 
   // check compatibility of dot and adjoint
   
-  ref = NumTraits<Scalar>::IsInteger ? 0 : std::max(std::max(v1.norm(),v2.norm()),std::max((square * v2).norm(),(square.adjoint() * v1).norm()));
+  ref = NumTraits<Scalar>::IsInteger ? 0 : (std::max)((std::max)(v1.norm(),v2.norm()),(std::max)((square * v2).norm(),(square.adjoint() * v1).norm()));
   VERIFY(test_isApproxWithRef(v1.dot(square * v2), (square.adjoint() * v1).dot(v2), ref));
 
   // like in testBasicStuff, test operator() to check const-qualification

test/bandmatrix.cpp

@@ -61,7 +61,7 @@ template<typename MatrixType> void bandmatrix(const MatrixType& _m)
     m.col(i).setConstant(static_cast<RealScalar>(i+1));
     dm1.col(i).setConstant(static_cast<RealScalar>(i+1));
   }
-  Index d = std::min(rows,cols);
+  Index d = (std::min)(rows,cols);
   Index a = std::max<Index>(0,cols-d-supers);
   Index b = std::max<Index>(0,rows-d-subs);
   if(a>0) dm1.block(0,d+supers,rows,a).setZero();

test/cholesky.cpp

@@ -124,6 +124,11 @@ template<typename MatrixType> void cholesky(const MatrixType& m)
     MatrixType neg = -symmLo;
     chollo.compute(neg);
     VERIFY(chollo.info()==NumericalIssue);
+
+    VERIFY_IS_APPROX(MatrixType(chollo.matrixL().transpose().conjugate()), MatrixType(chollo.matrixU()));
+    VERIFY_IS_APPROX(MatrixType(chollo.matrixU().transpose().conjugate()), MatrixType(chollo.matrixL()));
+    VERIFY_IS_APPROX(MatrixType(cholup.matrixL().transpose().conjugate()), MatrixType(cholup.matrixU()));
+    VERIFY_IS_APPROX(MatrixType(cholup.matrixU().transpose().conjugate()), MatrixType(cholup.matrixL()));
   }
 
   // LDLT
@@ -152,6 +157,11 @@ template<typename MatrixType> void cholesky(const MatrixType& m)
     matX = ldltup.solve(matB);
     VERIFY_IS_APPROX(symm * matX, matB);
 
+    VERIFY_IS_APPROX(MatrixType(ldltlo.matrixL().transpose().conjugate()), MatrixType(ldltlo.matrixU()));
+    VERIFY_IS_APPROX(MatrixType(ldltlo.matrixU().transpose().conjugate()), MatrixType(ldltlo.matrixL()));
+    VERIFY_IS_APPROX(MatrixType(ldltup.matrixL().transpose().conjugate()), MatrixType(ldltup.matrixU()));
+    VERIFY_IS_APPROX(MatrixType(ldltup.matrixU().transpose().conjugate()), MatrixType(ldltup.matrixL()));
+
     if(MatrixType::RowsAtCompileTime==Dynamic)
     {
       // note : each inplace permutation requires a small temporary vector (mask)
@@ -245,6 +255,22 @@ template<typename MatrixType> void cholesky_cplx(const MatrixType& m)
 
 }
 
+// regression test for bug 241
+template<typename MatrixType> void cholesky_bug241(const MatrixType& m)
+{
+  eigen_assert(m.rows() == 2 && m.cols() == 2);
+
+  typedef typename MatrixType::Scalar Scalar;
+  typedef Matrix<Scalar, MatrixType::RowsAtCompileTime, 1> VectorType;
+
+  MatrixType matA;
+  matA << 1, 1, 1, 1;
+  VectorType vecB;
+  vecB << 1, 1;
+  VectorType vecX = matA.ldlt().solve(vecB);
+  VERIFY_IS_APPROX(matA * vecX, vecB);
+}
+
 template<typename MatrixType> void cholesky_verify_assert()
 {
   MatrixType tmp;
@@ -271,6 +297,7 @@ void test_cholesky()
   for(int i = 0; i < g_repeat; i++) {
     CALL_SUBTEST_1( cholesky(Matrix<double,1,1>()) );
     CALL_SUBTEST_3( cholesky(Matrix2d()) );
+    CALL_SUBTEST_3( cholesky_bug241(Matrix2d()) );
     CALL_SUBTEST_4( cholesky(Matrix3f()) );
     CALL_SUBTEST_5( cholesky(Matrix4d()) );
     s = internal::random<int>(1,200);