// This file is part of Eigen, a lightweight C++ template library // for linear algebra. // // Copyright (C) 2011 Gael Guennebaud // Copyright (C) 2012 Desire NUENTSA WAKAM // // This Source Code Form is subject to the terms of the Mozilla // Public License v. 2.0. If a copy of the MPL was not distributed // with this file, You can obtain one at http://mozilla.org/MPL/2.0/. #ifndef EIGEN_SPARSE_MARKET_IO_H #define EIGEN_SPARSE_MARKET_IO_H #include #include // IWYU pragma: private #include "./InternalHeaderCheck.h" namespace Eigen { namespace internal { template inline void GetMarketLine(const char* line, StorageIndex& i, StorageIndex& j, Scalar& value) { std::stringstream sline(line); sline >> i >> j >> value; } template <> inline void GetMarketLine(const char* line, int& i, int& j, float& value) { std::sscanf(line, "%d %d %g", &i, &j, &value); } template <> inline void GetMarketLine(const char* line, int& i, int& j, double& value) { std::sscanf(line, "%d %d %lg", &i, &j, &value); } template <> inline void GetMarketLine(const char* line, int& i, int& j, std::complex& value) { std::sscanf(line, "%d %d %g %g", &i, &j, &numext::real_ref(value), &numext::imag_ref(value)); } template <> inline void GetMarketLine(const char* line, int& i, int& j, std::complex& value) { std::sscanf(line, "%d %d %lg %lg", &i, &j, &numext::real_ref(value), &numext::imag_ref(value)); } template inline void GetMarketLine(const char* line, StorageIndex& i, StorageIndex& j, std::complex& value) { std::stringstream sline(line); Scalar valR, valI; sline >> i >> j >> valR >> valI; value = std::complex(valR, valI); } template inline void GetDenseElt(const std::string& line, RealScalar& val) { std::istringstream newline(line); newline >> val; } template inline void GetDenseElt(const std::string& line, std::complex& val) { RealScalar valR, valI; std::istringstream newline(line); newline >> valR >> valI; val = std::complex(valR, valI); } template inline void putMarketHeader(std::string& header, int sym) { header = "%%MatrixMarket matrix coordinate "; if (internal::is_same >::value || internal::is_same >::value) { header += " complex"; if (sym == Symmetric) header += " symmetric"; else if (sym == SelfAdjoint) header += " Hermitian"; else header += " general"; } else { header += " real"; if (sym == Symmetric) header += " symmetric"; else header += " general"; } } template inline void PutMatrixElt(Scalar value, StorageIndex row, StorageIndex col, std::ofstream& out) { out << row << " " << col << " " << value << "\n"; } template inline void PutMatrixElt(std::complex value, StorageIndex row, StorageIndex col, std::ofstream& out) { out << row << " " << col << " " << value.real() << " " << value.imag() << "\n"; } template inline void putDenseElt(Scalar value, std::ofstream& out) { out << value << "\n"; } template inline void putDenseElt(std::complex value, std::ofstream& out) { out << value.real() << " " << value.imag() << "\n"; } } // end namespace internal /** * \ingroup SparseExtra_Module * @brief Reads the header of a matrixmarket file and determines the properties of a matrix * * @param filename of the file * @param sym if the matrix is hermitian,symmetric or none of the latter (sym=0) * @param iscomplex if the matrix has complex or real coefficients * @param isdense if the matrix is dense or sparse * @return true if the file was found */ inline bool getMarketHeader(const std::string& filename, int& sym, bool& iscomplex, bool& isdense) { sym = 0; iscomplex = false; isdense = false; std::ifstream in(filename.c_str(), std::ios::in); if (!in) return false; std::string line; // The matrix header is always the first line in the file std::getline(in, line); eigen_assert(in.good()); std::stringstream fmtline(line); std::string substr[5]; fmtline >> substr[0] >> substr[1] >> substr[2] >> substr[3] >> substr[4]; if (substr[2].compare("array") == 0) isdense = true; if (substr[3].compare("complex") == 0) iscomplex = true; if (substr[4].compare("symmetric") == 0) sym = Symmetric; else if (substr[4].compare("Hermitian") == 0) sym = SelfAdjoint; return true; } /** * \ingroup SparseExtra_Module * @brief Loads a sparse matrix from a matrixmarket format file. * * @tparam SparseMatrixType to read into, symmetries are not supported * @param mat SparseMatrix to read into, current values are overwritten * @param filename to parse matrix from * @return returns true if file exists. Returns false if the parsing did not succeed. */ template bool loadMarket(SparseMatrixType& mat, const std::string& filename) { typedef typename SparseMatrixType::Scalar Scalar; typedef typename SparseMatrixType::StorageIndex StorageIndex; std::ifstream input(filename.c_str(), std::ios::in); if (!input) return false; char rdbuffer[4096]; input.rdbuf()->pubsetbuf(rdbuffer, 4096); const int maxBuffersize = 2048; char buffer[maxBuffersize]; bool readsizes = false; typedef Triplet T; std::vector elements; Index M(-1), N(-1), NNZ(-1); Index count = 0; while (input.getline(buffer, maxBuffersize)) { // skip comments // NOTE An appropriate test should be done on the header to get the symmetry if (buffer[0] == '%') continue; if (!readsizes) { std::stringstream line(buffer); line >> M >> N >> NNZ; if (M > 0 && N > 0) { readsizes = true; mat.resize(M, N); mat.reserve(NNZ); elements.reserve(NNZ); } } else { StorageIndex i(-1), j(-1); Scalar value; internal::GetMarketLine(buffer, i, j, value); i--; j--; if (i >= 0 && j >= 0 && i < M && j < N) { ++count; elements.push_back(T(i, j, value)); } else { std::cerr << "Invalid read: " << i << "," << j << "\n"; return false; } } } mat.setFromTriplets(elements.begin(), elements.end()); if (count != NNZ) { std::cerr << count << "!=" << NNZ << "\n"; return false; } input.close(); return true; } /** * \ingroup SparseExtra_Module * @brief Loads a dense Matrix or Vector from a matrixmarket file. If a statically sized matrix has to be parsed and the * file contains the wrong dimensions it is undefined behaviour. * * @tparam DenseMatrixType to read into * @param mat DenseMatrix to read into, current values are overwritten, symmetries are not supported * @param filename to parse matrix from * @return true if parsing was successful. Returns false if the parsing did not succeed. */ template bool loadMarketDense(DenseType& mat, const std::string& filename) { typedef typename DenseType::Scalar Scalar; std::ifstream in(filename.c_str(), std::ios::in); if (!in) return false; std::string line; Index rows(0), cols(0); do { // Skip comments std::getline(in, line); eigen_assert(in.good()); } while (line[0] == '%'); std::istringstream newline(line); newline >> rows >> cols; bool sizes_not_positive = (rows < 1 || cols < 1); bool wrong_input_rows = (DenseType::MaxRowsAtCompileTime != Dynamic && rows > DenseType::MaxRowsAtCompileTime) || (DenseType::RowsAtCompileTime != Dynamic && rows != DenseType::RowsAtCompileTime); bool wrong_input_cols = (DenseType::MaxColsAtCompileTime != Dynamic && cols > DenseType::MaxColsAtCompileTime) || (DenseType::ColsAtCompileTime != Dynamic && cols != DenseType::ColsAtCompileTime); if (sizes_not_positive || wrong_input_rows || wrong_input_cols) { if (sizes_not_positive) { std::cerr << "non-positive row or column size in file" << filename << "\n"; } else { std::cerr << "Input matrix can not be resized to" << rows << " x " << cols << "as given in " << filename << "\n"; } in.close(); return false; } mat.resize(rows, cols); Index row = 0; Index col = 0; Index n = 0; Scalar value; while (std::getline(in, line) && (row < rows) && (col < cols)) { internal::GetDenseElt(line, value); // matrixmarket format is column major mat(row, col) = value; row++; if (row == rows) { row = 0; col++; } n++; } in.close(); if (n != mat.size()) { std::cerr << "Unable to read all elements from file " << filename << "\n"; return false; } return true; } /** * \ingroup SparseExtra_Module * @brief Same functionality as loadMarketDense, deprecated */ template bool loadMarketVector(VectorType& vec, const std::string& filename) { return loadMarketDense(vec, filename); } /** * \ingroup SparseExtra_Module * @brief writes a sparse Matrix to a marketmarket format file * * @tparam SparseMatrixType to write to file * @param mat matrix to write to file * @param filename filename to write to * @param sym at the moment no symmetry operations are supported * @return true if writing succeeded */ template bool saveMarket(const SparseMatrixType& mat, const std::string& filename, int sym = 0) { typedef typename SparseMatrixType::Scalar Scalar; typedef typename SparseMatrixType::RealScalar RealScalar; std::ofstream out(filename.c_str(), std::ios::out); if (!out) return false; out.flags(std::ios_base::scientific); out.precision(std::numeric_limits::digits10 + 2); std::string header; internal::putMarketHeader(header, sym); out << header << std::endl; out << mat.rows() << " " << mat.cols() << " " << mat.nonZeros() << "\n"; int count = 0; EIGEN_UNUSED_VARIABLE(count); for (int j = 0; j < mat.outerSize(); ++j) for (typename SparseMatrixType::InnerIterator it(mat, j); it; ++it) { ++count; internal::PutMatrixElt(it.value(), it.row() + 1, it.col() + 1, out); } out.close(); return true; } /** * \ingroup SparseExtra_Module * @brief writes a dense Matrix or vector to a marketmarket format file * * @tparam DenseMatrixType to write to file * @param mat matrix to write to file * @param filename filename to write to * @return true if writing succeeded */ template bool saveMarketDense(const DenseType& mat, const std::string& filename) { typedef typename DenseType::Scalar Scalar; typedef typename DenseType::RealScalar RealScalar; std::ofstream out(filename.c_str(), std::ios::out); if (!out) return false; out.flags(std::ios_base::scientific); out.precision(std::numeric_limits::digits10 + 2); if (internal::is_same >::value || internal::is_same >::value) out << "%%MatrixMarket matrix array complex general\n"; else out << "%%MatrixMarket matrix array real general\n"; out << mat.rows() << " " << mat.cols() << "\n"; for (Index i = 0; i < mat.cols(); i++) { for (Index j = 0; j < mat.rows(); j++) { internal::putDenseElt(mat(j, i), out); } } out.close(); return true; } /** * \ingroup SparseExtra_Module * @brief Same functionality as saveMarketDense, deprecated */ template bool saveMarketVector(const VectorType& vec, const std::string& filename) { return saveMarketDense(vec, filename); } } // end namespace Eigen #endif // EIGEN_SPARSE_MARKET_IO_H