Merge Index-refactoring branch with default, fix PastixSupport, remove some useless typedefs

This commit is contained in:
Gael Guennebaud
2015-02-13 10:03:53 +01:00
227 changed files with 32433 additions and 5999 deletions

View File

@@ -51,7 +51,7 @@ struct traits<SparseMatrix<_Scalar, _Options, _Index> >
ColsAtCompileTime = Dynamic,
MaxRowsAtCompileTime = Dynamic,
MaxColsAtCompileTime = Dynamic,
Flags = _Options | NestByRefBit | LvalueBit,
Flags = _Options | NestByRefBit | LvalueBit | CompressedAccessBit,
SupportedAccessPatterns = InnerRandomAccessPattern
};
};
@@ -90,16 +90,20 @@ struct traits<Diagonal<const SparseMatrix<_Scalar, _Options, _Index>, DiagIndex>
template<typename _Scalar, int _Options, typename _Index>
class SparseMatrix
: public SparseMatrixBase<SparseMatrix<_Scalar, _Options, _Index> >
: public SparseCompressedBase<SparseMatrix<_Scalar, _Options, _Index> >
{
public:
EIGEN_SPARSE_PUBLIC_INTERFACE(SparseMatrix)
typedef SparseCompressedBase<SparseMatrix> Base;
using Base::isCompressed;
_EIGEN_SPARSE_PUBLIC_INTERFACE(SparseMatrix)
EIGEN_SPARSE_INHERIT_ASSIGNMENT_OPERATOR(SparseMatrix, +=)
EIGEN_SPARSE_INHERIT_ASSIGNMENT_OPERATOR(SparseMatrix, -=)
typedef MappedSparseMatrix<Scalar,Flags> Map;
typedef Diagonal<SparseMatrix> DiagonalReturnType;
typedef Diagonal<const SparseMatrix> ConstDiagonalReturnType;
typedef typename Base::InnerIterator InnerIterator;
typedef typename Base::ReverseInnerIterator ReverseInnerIterator;
using Base::IsRowMajor;
@@ -124,9 +128,6 @@ class SparseMatrix
public:
/** \returns whether \c *this is in compressed form. */
inline bool isCompressed() const { return m_innerNonZeros==0; }
/** \returns the number of rows of the matrix */
inline StorageIndex rows() const { return IsRowMajor ? m_outerSize : m_innerSize; }
/** \returns the number of columns of the matrix */
@@ -180,7 +181,7 @@ class SparseMatrix
/** \returns the value of the matrix at position \a i, \a j
* This function returns Scalar(0) if the element is an explicit \em zero */
inline const Scalar& coeff(Index row, Index col) const
inline Scalar coeff(Index row, Index col) const
{
eigen_assert(row>=0 && row<rows() && col>=0 && col<cols());
@@ -242,9 +243,6 @@ class SparseMatrix
public:
class InnerIterator;
class ReverseInnerIterator;
/** Removes all non zeros but keep allocated memory */
inline void setZero()
{
@@ -874,77 +872,6 @@ private:
};
};
template<typename Scalar, int _Options, typename _Index>
class SparseMatrix<Scalar,_Options,_Index>::InnerIterator
{
public:
InnerIterator(const SparseMatrix& mat, Index outer)
: m_values(mat.valuePtr()), m_indices(mat.innerIndexPtr()), m_outer(convert_index(outer)), m_id(mat.m_outerIndex[outer])
{
if(mat.isCompressed())
m_end = mat.m_outerIndex[outer+1];
else
m_end = m_id + mat.m_innerNonZeros[outer];
}
inline InnerIterator& operator++() { m_id++; return *this; }
inline const Scalar& value() const { return m_values[m_id]; }
inline Scalar& valueRef() { return const_cast<Scalar&>(m_values[m_id]); }
inline StorageIndex index() const { return m_indices[m_id]; }
inline StorageIndex outer() const { return m_outer; }
inline StorageIndex row() const { return IsRowMajor ? m_outer : index(); }
inline StorageIndex col() const { return IsRowMajor ? index() : m_outer; }
inline operator bool() const { return (m_id < m_end); }
protected:
const Scalar* m_values;
const StorageIndex* m_indices;
const StorageIndex m_outer;
StorageIndex m_id;
StorageIndex m_end;
private:
// If you get here, then you're not using the right InnerIterator type, e.g.:
// SparseMatrix<double,RowMajor> A;
// SparseMatrix<double>::InnerIterator it(A,0);
template<typename T> InnerIterator(const SparseMatrixBase<T>&,Index outer);
};
template<typename Scalar, int _Options, typename _Index>
class SparseMatrix<Scalar,_Options,_Index>::ReverseInnerIterator
{
public:
ReverseInnerIterator(const SparseMatrix& mat, Index outer)
: m_values(mat.valuePtr()), m_indices(mat.innerIndexPtr()), m_outer(outer), m_start(mat.m_outerIndex[outer])
{
if(mat.isCompressed())
m_id = mat.m_outerIndex[outer+1];
else
m_id = m_start + mat.m_innerNonZeros[outer];
}
inline ReverseInnerIterator& operator--() { --m_id; return *this; }
inline const Scalar& value() const { return m_values[m_id-1]; }
inline Scalar& valueRef() { return const_cast<Scalar&>(m_values[m_id-1]); }
inline StorageIndex index() const { return m_indices[m_id-1]; }
inline StorageIndex outer() const { return m_outer; }
inline StorageIndex row() const { return IsRowMajor ? m_outer : index(); }
inline StorageIndex col() const { return IsRowMajor ? index() : m_outer; }
inline operator bool() const { return (m_id > m_start); }
protected:
const Scalar* m_values;
const StorageIndex* m_indices;
const StorageIndex m_outer;
StorageIndex m_id;
const StorageIndex m_start;
};
namespace internal {
template<typename InputIterator, typename SparseMatrixType>
@@ -1074,6 +1001,10 @@ EIGEN_DONT_INLINE SparseMatrix<Scalar,_Options,_Index>& SparseMatrix<Scalar,_Opt
EIGEN_STATIC_ASSERT((internal::is_same<Scalar, typename OtherDerived::Scalar>::value),
YOU_MIXED_DIFFERENT_NUMERIC_TYPES__YOU_NEED_TO_USE_THE_CAST_METHOD_OF_MATRIXBASE_TO_CAST_NUMERIC_TYPES_EXPLICITLY)
#ifdef EIGEN_SPARSE_CREATE_TEMPORARY_PLUGIN
EIGEN_SPARSE_CREATE_TEMPORARY_PLUGIN
#endif
const bool needToTranspose = (Flags & RowMajorBit) != (internal::evaluator<OtherDerived>::Flags & RowMajorBit);
if (needToTranspose)
{
@@ -1276,44 +1207,12 @@ namespace internal {
template<typename _Scalar, int _Options, typename _Index>
struct evaluator<SparseMatrix<_Scalar,_Options,_Index> >
: evaluator_base<SparseMatrix<_Scalar,_Options,_Index> >
: evaluator<SparseCompressedBase<SparseMatrix<_Scalar,_Options,_Index> > >
{
typedef _Scalar Scalar;
typedef evaluator<SparseCompressedBase<SparseMatrix<_Scalar,_Options,_Index> > > Base;
typedef SparseMatrix<_Scalar,_Options,_Index> SparseMatrixType;
typedef typename SparseMatrixType::InnerIterator InnerIterator;
typedef typename SparseMatrixType::ReverseInnerIterator ReverseInnerIterator;
enum {
CoeffReadCost = NumTraits<_Scalar>::ReadCost,
Flags = SparseMatrixType::Flags
};
evaluator() : m_matrix(0) {}
explicit evaluator(const SparseMatrixType &mat) : m_matrix(&mat) {}
operator SparseMatrixType&() { return m_matrix->const_cast_derived(); }
operator const SparseMatrixType&() const { return *m_matrix; }
typedef typename DenseCoeffsBase<SparseMatrixType,ReadOnlyAccessors>::CoeffReturnType CoeffReturnType;
CoeffReturnType coeff(Index row, Index col) const
{ return m_matrix->coeff(row,col); }
Scalar& coeffRef(Index row, Index col)
{
eigen_internal_assert(row>=0 && row<m_matrix->rows() && col>=0 && col<m_matrix->cols());
const Index outer = SparseMatrixType::IsRowMajor ? row : col;
const Index inner = SparseMatrixType::IsRowMajor ? col : row;
Index start = m_matrix->outerIndexPtr()[outer];
Index end = m_matrix->isCompressed() ? m_matrix->outerIndexPtr()[outer+1] : m_matrix->outerIndexPtr()[outer] + m_matrix->innerNonZeroPtr()[outer];
eigen_assert(end>start && "you are using a non finalized sparse matrix or written coefficient does not exist");
const Index p = m_matrix->data().searchLowerIndex(start,end-1,inner);
eigen_assert((p<end) && (m_matrix->data().index(p)==inner) && "written coefficient does not exist");
return m_matrix->const_cast_derived().data().value(p);
}
const SparseMatrixType *m_matrix;
evaluator() : Base() {}
explicit evaluator(const SparseMatrixType &mat) : Base(mat) {}
};
}