bug #1574: implement "sparse_matrix =,+=,-= diagonal_matrix" with smart insertion strategies of missing diagonal coeffs.

This commit is contained in:
Gael Guennebaud
2019-01-28 17:29:50 +01:00
parent 803fa79767
commit f489f44519
4 changed files with 156 additions and 24 deletions

View File

@@ -502,6 +502,113 @@ class SparseMatrix
m_innerNonZeros[i] = m_outerIndex[i+1] - m_outerIndex[i];
}
}
/** \internal assign \a diagXpr to the diagonal of \c *this
* There are different strategies:
* 1 - if *this is overwritten (Func==assign_op) or *this is empty, then we can work treat *this as a dense vector expression.
* 2 - otherwise, for each diagonal coeff,
* 2.a - if it already exists, then we update it,
* 2.b - otherwise, if *this is uncompressed and that the current inner-vector has empty room for at least 1 element, then we perform an in-place insertion.
* 2.c - otherwise, we'll have to reallocate and copy everything, so instead of doing so for each new element, it is recorded in a std::vector.
* 3 - at the end, if some entries failed to be inserted in-place, then we alloc a new buffer, copy each chunk at the right position, and insert the new elements.
*
* TODO: some piece of code could be isolated and reused for a general in-place update strategy.
* TODO: if we start to defer the insertion of some elements (i.e., case 2.c executed once),
* then it *might* be better to disable case 2.b since they will have to be copied anyway.
*/
template<typename DiagXpr, typename Func>
void _assignDiagonal(const DiagXpr diagXpr, const Func& assignFunc)
{
struct Record {
Record(Index a_i, Index a_p) : i(a_i), p(a_p) {}
Index i;
Index p;
};
Index n = diagXpr.size();
const bool overwrite = internal::is_same<Func, internal::assign_op<Scalar,Scalar> >::value;
if(overwrite)
{
if((this->rows()!=n) || (this->cols()!=n))
this->resize(n, n);
}
if(m_data.size()==0 || overwrite)
{
typedef Array<StorageIndex,Dynamic,1> ArrayXI;
this->makeCompressed();
this->resizeNonZeros(n);
Eigen::Map<ArrayXI>(this->innerIndexPtr(), n).setLinSpaced(0,StorageIndex(n)-1);
Eigen::Map<ArrayXI>(this->outerIndexPtr(), n+1).setLinSpaced(0,StorageIndex(n));
Eigen::Map<Array<Scalar,Dynamic,1> > values = this->coeffs();
values.setZero();
internal::call_assignment_no_alias(values, diagXpr, assignFunc);
}
else
{
bool isComp = isCompressed();
internal::evaluator<DiagXpr> diaEval(diagXpr);
std::vector<Record> newEntries;
// 1 - try in-place update and record insertion failures
for(Index i = 0; i<n; ++i)
{
internal::LowerBoundIndex lb = this->lower_bound(i,i);
Index p = lb.value;
if(lb.found)
{
// the coeff already exists
assignFunc.assignCoeff(m_data.value(p), diaEval.coeff(i));
}
else if((!isComp) && m_innerNonZeros[i] < (m_outerIndex[i+1]-m_outerIndex[i]))
{
// non compressed mode with local room for inserting one element
m_data.moveChunk(p, p+1, m_outerIndex[i]+m_innerNonZeros[i]-p);
m_innerNonZeros[i]++;
m_data.value(p) = Scalar(0);
m_data.index(p) = StorageIndex(i);
assignFunc.assignCoeff(m_data.value(p), diaEval.coeff(i));
}
else
{
// defer insertion
newEntries.push_back(Record(i,p));
}
}
// 2 - insert deferred entries
Index n_entries = Index(newEntries.size());
if(n_entries>0)
{
Storage newData(m_data.size()+n_entries);
Index prev_p = 0;
Index prev_i = 0;
for(Index k=0; k<n_entries;++k)
{
Index i = newEntries[k].i;
Index p = newEntries[k].p;
internal::smart_copy(m_data.valuePtr()+prev_p, m_data.valuePtr()+p, newData.valuePtr()+prev_p+k);
internal::smart_copy(m_data.indexPtr()+prev_p, m_data.indexPtr()+p, newData.indexPtr()+prev_p+k);
for(Index j=prev_i;j<i;++j)
m_outerIndex[j+1] += k;
if(!isComp)
m_innerNonZeros[i]++;
prev_p = p;
prev_i = i;
newData.value(p+k) = Scalar(0);
newData.index(p+k) = StorageIndex(i);
assignFunc.assignCoeff(newData.value(p+k), diaEval.coeff(i));
}
{
internal::smart_copy(m_data.valuePtr()+prev_p, m_data.valuePtr()+m_data.size(), newData.valuePtr()+prev_p+n_entries);
internal::smart_copy(m_data.indexPtr()+prev_p, m_data.indexPtr()+m_data.size(), newData.indexPtr()+prev_p+n_entries);
for(Index j=prev_i+1;j<=m_outerSize;++j)
m_outerIndex[j] += n_entries;
}
m_data.swap(newData);
}
}
}
/** Suppresses all nonzeros which are \b much \b smaller \b than \a reference under the tolerance \a epsilon */
void prune(const Scalar& reference, const RealScalar& epsilon = NumTraits<RealScalar>::dummy_precision())