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Add serialization for sparse matrix and sparse vector.
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@@ -1496,6 +1496,125 @@ struct evaluator<SparseMatrix<Scalar_,Options_,StorageIndex_> >
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}
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// Specialization for SparseMatrix.
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// Serializes [rows, cols, isCompressed, outerSize, numNonZeros, innerNonZeros,
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// outerIndices, innerIndices, values].
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template <typename Scalar, int Options, typename StorageIndex>
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class Serializer<SparseMatrix<Scalar, Options, StorageIndex>, void> {
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public:
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typedef SparseMatrix<Scalar, Options, StorageIndex> SparseMat;
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struct Header {
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typename SparseMat::Index rows;
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typename SparseMat::Index cols;
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bool compressed;
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Index outer_size;
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Index num_non_zeros;
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};
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EIGEN_DEVICE_FUNC size_t size(const SparseMat& value) const {
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// innerNonZeros.
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std::size_t num_storage_indices =
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value.isCompressed() ? 0 : value.outerSize();
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// Outer indices.
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num_storage_indices += value.outerSize() + 1;
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// Inner indices.
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num_storage_indices += value.nonZeros();
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// Values.
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std::size_t num_values = value.nonZeros();
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return sizeof(Header) + sizeof(Scalar) * num_values +
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sizeof(StorageIndex) * num_storage_indices;
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}
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EIGEN_DEVICE_FUNC uint8_t* serialize(uint8_t* dest, uint8_t* end,
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const SparseMat& value) {
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if (EIGEN_PREDICT_FALSE(dest == nullptr)) return nullptr;
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if (EIGEN_PREDICT_FALSE(dest + size(value) > end)) return nullptr;
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const size_t header_bytes = sizeof(Header);
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Header header = {value.rows(), value.cols(), value.isCompressed(),
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value.outerSize(), value.nonZeros()};
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EIGEN_USING_STD(memcpy)
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memcpy(dest, &header, header_bytes);
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dest += header_bytes;
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// innerNonZeros.
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size_t data_bytes = sizeof(StorageIndex) * header.outer_size;
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if (!header.compressed) {
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memcpy(dest, value.innerNonZeroPtr(), data_bytes);
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dest += data_bytes;
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}
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// Outer indices.
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data_bytes = sizeof(StorageIndex) * (header.outer_size + 1);
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memcpy(dest, value.outerIndexPtr(), data_bytes);
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dest += data_bytes;
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// Inner indices.
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data_bytes = sizeof(StorageIndex) * header.num_non_zeros;
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memcpy(dest, value.innerIndexPtr(), data_bytes);
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dest += data_bytes;
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// Values.
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data_bytes = sizeof(Scalar) * header.num_non_zeros;
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memcpy(dest, value.valuePtr(), data_bytes);
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dest += data_bytes;
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return dest;
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}
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EIGEN_DEVICE_FUNC const uint8_t* deserialize(const uint8_t* src,
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const uint8_t* end,
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SparseMat& value) const {
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if (EIGEN_PREDICT_FALSE(src == nullptr)) return nullptr;
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if (EIGEN_PREDICT_FALSE(src + sizeof(Header) > end)) return nullptr;
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const size_t header_bytes = sizeof(Header);
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Header header;
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EIGEN_USING_STD(memcpy)
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memcpy(&header, src, header_bytes);
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src += header_bytes;
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value.setZero();
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value.resize(header.rows, header.cols);
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// Initialize compressed state and inner non-zeros.
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size_t data_bytes = sizeof(StorageIndex) * header.outer_size;
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if (EIGEN_PREDICT_FALSE(src + data_bytes > end)) return nullptr;
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if (header.compressed) {
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value.makeCompressed();
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value.resizeNonZeros(header.num_non_zeros);
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} else {
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// Temporarily load inner sizes, then reserve.
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std::vector<StorageIndex> inner_sizes(header.outer_size);
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memcpy(inner_sizes.data(), src, data_bytes);
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src += data_bytes;
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value.uncompress();
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value.reserve(inner_sizes);
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memcpy(value.innerNonZeroPtr(), inner_sizes.data(), data_bytes);
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}
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// Outer indices.
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data_bytes = sizeof(StorageIndex) * (header.outer_size + 1);
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memcpy(value.outerIndexPtr(), src, data_bytes);
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src += data_bytes;
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// Inner indices.
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data_bytes = sizeof(StorageIndex) * header.num_non_zeros;
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if (EIGEN_PREDICT_FALSE(src + data_bytes > end)) return nullptr;
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memcpy(value.innerIndexPtr(), src, data_bytes);
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src += data_bytes;
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// Values.
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data_bytes = sizeof(Scalar) * header.num_non_zeros;
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if (EIGEN_PREDICT_FALSE(src + data_bytes > end)) return nullptr;
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memcpy(value.valuePtr(), src, data_bytes);
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src += data_bytes;
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return src;
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}
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};
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} // end namespace Eigen
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#endif // EIGEN_SPARSEMATRIX_H
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